suba logo
AT2G02060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G14600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ6DeggNOG:ENOG410YDJIEMBL:AK229511EMBL:BT008556
EMBL:BT008699EMBL:CP002685EMBL:KJ138924EnsemblPlants:AT2G02060
EnsemblPlants:AT2G02060.1entrez:814737Gene3D:1.10.10.60GeneID:814737
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0016740Gramene:AT2G02060.1hmmpanther:PTHR31314
HOGENOM:HOG000239342InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT2G02060OMA:TRNDCLLPfam:PF00249
Pfscan:PS51294PhylomeDB:Q7X887PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_565281.2SMR:Q7X887SUPFAM:SSF46689TAIR:AT2G02060
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.41520UniProt:Q7X887
Coordinates (TAIR10) chr2:+:495691..497609
Molecular Weight (calculated) 28614.20 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.75
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)