AT1G35560.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TCP family transcription factor | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G72010.1); Has 382 Blast hits to 382 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 349; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:13116099..13117124 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35952.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 341 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ 101: QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK 201: PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL 301: FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)