suba logo
AT1G35560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G72010.1); Has 382 Blast hits to 382 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 349; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:25684eggNOG:ENOG410ITVKeggNOG:ENOG410YBA4EMBL:AC007887
EMBL:AY056429EMBL:AY081714EMBL:CP002684EnsemblPlants:AT1G35560
EnsemblPlants:AT1G35560.1entrez:840452GeneID:840452Genevisible:Q9LQF0
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0048510Gramene:AT1G35560.1hmmpanther:PTHR31072
hmmpanther:PTHR31072:SF21HOGENOM:HOG000110300InterPro:IPR005333InterPro:IPR017887
iPTMnet:Q9LQF0KEGG:ath:AT1G35560PaxDb:Q9LQF0Pfam:PF03634
Pfam:Q9LQF0Pfscan:PS51369PhylomeDB:Q9LQF0PIR:H86476
PRIDE:Q9LQF0PRO:PR:Q9LQF0PROSITE:PS51369ProteinModelPortal:Q9LQF0
Proteomes:UP000006548RefSeq:NP_174789.1STRING:3702.AT1G35560.1TAIR:AT1G35560
UniGene:At.26325UniProt:Q9LQF0
Coordinates (TAIR10) chr1:-:13116099..13117124
Molecular Weight (calculated) 35952.10 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.56
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ
101: QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK
201: PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL
301: FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)