AT1G13400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2 and C2HC zinc fingers superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NUBBIN (NUB); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: stamen development, anther development, carpel development; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G68480.1); Has 743 Blast hits to 743 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4597784..4598911 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23151.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.74 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 207 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRADENNTLD LNNLPDDPSR DIFPFFEEGF SSSSSSGGFR EKQTKDGKEY ECRFCSLKFF KSQALGGHMN RHRQERETES LNKARELVLR NDSFPPHQGP 101: PSFSYHQGDV HIGDLTQFKP MMYPPRHFSL PGSSSILQLQ PPYLYPPLSS PFPQHNTNIG NNGTRHQTLT NSVCGGRALP DSSYTFIGAP VANGSRVAPH 201: LPPHHGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)