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AT5G60553.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Defensin-like (DEFL) family protein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT5G51845.1); Has 17 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB011483EMBL:CP002688EnsemblPlants:AT5G60553EnsemblPlants:AT5G60553.1
entrez:3771541GeneID:3771541GO:GO:0005576GO:GO:0031640
GO:GO:0050832Gramene:AT5G60553.1HOGENOM:HOG000129987KEGG:ath:AT5G60553
OMA:FEKCGGRPaxDb:Q2V2W8Pfam:Q2V2W8PhylomeDB:Q2V2W8
PRIDE:Q2V2W8PRO:PR:Q2V2W8Proteomes:UP000006548RefSeq:NP_001032111.1
TAIR:AT5G60553UniGene:At.63371UniProt:Q2V2W8
Coordinates (TAIR10) chr5:+:24343205..24343444
Molecular Weight (calculated) 8788.80 Da
IEP (calculated) 8.41
GRAVY (calculated) 0.03
Length 79 amino acids
Sequence (TAIR10)
(BLAST)
1: MSSKIKFVAL LIVVISLLLN NAQSTREILS AEICGWNDPA VHCKTKEDCF EKCGGRPAKK VFCVRPGDHS YDRLCCCRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)