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AT3G15030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP family transcription factor 4
Curator
Summary (TAIR10)
Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.
Computational
Description (TAIR10)
TCP family transcription factor 4 (TCP4); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (TAIR:AT1G53230.1); Has 1577 Blast hits to 1575 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 13; Plants - 1470; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGQYeggNOG:ENOG410YG88EMBL:AK316704EnsemblPlants:AT3G15030
EnsemblPlants:AT3G15030.1EnsemblPlants:AT3G15030.2EnsemblPlants:AT3G15030.3entrez:820732
ExpressionAtlas:B9DFB4GeneID:820732Gramene:AT3G15030.1Gramene:AT3G15030.2
Gramene:AT3G15030.3hmmpanther:PTHR31072hmmpanther:PTHR31072:SF3InterPro:IPR005333
InterPro:IPR017887KEGG:ath:AT3G15030OMA:QNENANNPaxDb:B9DFB4
Pfam:PF03634Pfam:Q8LPR5Pfscan:PS51369PhylomeDB:B9DFB4
PROSITE:PS51369ProteinModelPortal:B9DFB4RefSeq:NP_001189896.1RefSeq:NP_188121.1
RefSeq:NP_850589.1STRING:3702.AT3G15030.1TAIR:AT3G15030tair10-symbols:MEE35
tair10-symbols:TCP4UniGene:At.23764UniGene:At.67251UniGene:At.75241
UniProt:B9DFB4UniProt:Q8LPR5
Coordinates (TAIR10) chr3:+:5062308..5063570
Molecular Weight (calculated) 45965.90 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.82
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDDQFHHPP PPSSMRHRST SDAADGGCGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIKKAKTSI
101: DELAELPPWN PADAIRLAAA NAKPRRTTAK TQISPSPPPP QQQQQQQQLQ FGVGFNGGGA EHPSNNESSF LPPSMDSDSI ADTIKSFFPV IGSSTEAPSN
201: HNLMHNYHHQ HPPDLLSRTN SQNQDLRLSL QSFPDGPPSL LHHQHHHHTS ASASEPTLFY GQSNPLGFDT SSWEQQSSEF GRIQRLVAWN SGGGGGATDT
301: GNGGGFLFAP PTPSTTSFQP VLGQSQQLYS QRGPLQSSYS PMIRAWFDPH HHHQSISTDD LNHHHHLPPP VHQSAIPGIG FASGEFSSGF RIPARFQGQE
401: EEQHDGLTHK PSSASSISRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)