AT3G05690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nuclear factor Y, subunit A2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nuclear factor Y, subunit A2 (NF-YA2); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A10 (TAIR:AT5G06510.2); Has 655 Blast hits to 655 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 132; Plants - 359; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1676922..1678324 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32141.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.05 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMQTVREGL FSAPQTSWWT AFGSQPLAPE SLAGDSDSFA GVKVGSVGET GQRVDKQSNS ATHLAFSLGD VKSPRLVPKP HGATFSMQSP CLELGFSQPP 101: IYTKYPYGEQ QYYGVVSAYG SQSRVMLPLN METEDSTIYV NSKQYHGIIR RRQSRAKAAA VLDQKKLSSR CRKPYMHHSR HLHALRRPRG SGGRFLNTKS 201: QNLENSGTNA KKGDGSMQIQ SQPKPQQSNS QNSEVVHPEN GTMNLSNGLN VSGSEVTSMN YFLSSPVHSL GGMVMPSKWI AAAAAMDNGC CNFKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)