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AT4G35900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein
Curator
Summary (TAIR10)
bZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.
Computational
Description (TAIR10)
FD; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper motif 27 (TAIR:AT2G17770.2); Has 747 Blast hits to 421 proteins in 73 species: Archae - 0; Bacteria - 6; Metazoa - 144; Fungi - 40; Plants - 193; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).
Protein Annotations
BioGrid:15026eggNOG:ENOG410J0ABeggNOG:ENOG410YWQ7EMBL:AB105818
EMBL:AB105819EMBL:AB105820EMBL:AB105821EMBL:AB105822
EMBL:AB105823EMBL:AB105824EMBL:AB105825EMBL:AB105826
EMBL:AB105827EMBL:AL022373EMBL:AL031986EMBL:AL161588
EMBL:BN000021EMBL:CP002687EnsemblPlants:AT4G35900EnsemblPlants:AT4G35900.1
entrez:829744GeneID:829744Genevisible:Q84JK2GO:GO:0003700
GO:GO:0005634GO:GO:0006355GO:GO:0043565GO:GO:0043621
GO:GO:2000028Gramene:AT4G35900.1hmmpanther:PTHR22952hmmpanther:PTHR22952:SF95
HOGENOM:HOG000234935InParanoid:Q84JK2IntAct:Q84JK2InterPro:IPR004827
KEGG:ath:AT4G35900ncoils:CoilOMA:EDINFASPaxDb:Q84JK2
Pfam:PF00170Pfam:Q84JK2Pfscan:PS50217PhylomeDB:Q84JK2
PIR:T04700PRIDE:Q84JK2PRO:PR:Q84JK2PROSITE:PS00036
PROSITE:PS50217ProteinModelPortal:Q84JK2Proteomes:UP000006548RefSeq:NP_195315.3
scanprosite:PS00036SMART:SM00338SMR:Q84JK2STRING:3702.AT4G35900.1
SUPFAM:SSF57959TAIR:AT4G35900tair10-symbols:atbzip14tair10-symbols:FD
tair10-symbols:FD-1UniGene:At.31374UniProt:Q84JK2
Coordinates (TAIR10) chr4:+:17004746..17005952
Molecular Weight (calculated) 31379.10 Da
IEP (calculated) 10.91
GRAVY (calculated) -0.97
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)