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AT5G03840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : PEBP (phosphatidylethanolamine-binding protein) family protein
Curator
Summary (TAIR10)
Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole.
Computational
Description (TAIR10)
TERMINAL FLOWER 1 (TFL1); CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: centroradialis (TAIR:AT2G27550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16959eggNOG:COG1881eggNOG:KOG3346EMBL:AB005235
EMBL:AL162873EMBL:CP002688EMBL:D86932EMBL:D87130
EMBL:D87519EMBL:U77674EnsemblPlants:AT5G03840EnsemblPlants:AT5G03840.1
entrez:831683EvolutionaryTrace:P93003ExpressionAtlas:P93003Gene3D:3.90.280.10
GeneID:831683Genevisible:P93003GO:GO:0003712GO:GO:0005634
GO:GO:0005737GO:GO:0005773GO:GO:0005886GO:GO:0006623
GO:GO:0009744GO:GO:0009908GO:GO:0009910GO:GO:0030154
GO:GO:0031982GO:GO:0090344GO:GO:1903506Gramene:AT5G03840.1
hmmpanther:PTHR11362hmmpanther:PTHR11362:SF13HOGENOM:HOG000237656InParanoid:P93003
IntAct:P93003InterPro:IPR001858InterPro:IPR008914KEGG:ath:AT5G03840
OMA:EVINYESPaxDb:P93003PDB:1WKOPDBsum:1WKO
Pfam:P93003Pfam:PF01161PhylomeDB:P93003PIR:T48411
PRIDE:P93003PRO:PR:P93003PROSITE:PS01220ProteinModelPortal:P93003
Proteomes:UP000006548RefSeq:NP_196004.1scanprosite:PS01220SMR:P93003
STRING:3702.AT5G03840.1SUPFAM:SSF49777TAIR:AT5G03840tair10-symbols:TFL-1
tair10-symbols:TFL1UniGene:At.1041UniProt:P93003UniProt:Q547P7
Coordinates (TAIR10) chr5:-:1024760..1025796
Molecular Weight (calculated) 20159.40 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.22
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MENMGTRVIE PLIMGRVVGD VLDFFTPTTK MNVSYNKKQV SNGHELFPSS VSSKPRVEIH GGDLRSFFTL VMIDPDVPGP SDPFLKEHLH WIVTNIPGTT
101: DATFGKEVVS YELPRPSIGI HRFVFVLFRQ KQRRVIFPNI PSRDHFNTRK FAVEYDLGLP VAAVFFNAQR ETAARKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)