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AT5G10310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J45KeggNOG:ENOG410Z50TEMBL:AL360334EMBL:BT010810
EMBL:BT011282EMBL:CP002688EnsemblPlants:AT5G10310EnsemblPlants:AT5G10310.1
entrez:830895GeneID:830895Genevisible:Q9LFT5GO:GO:0005576
GO:GO:0010052GO:GO:0010374Gramene:AT5G10310.1hmmpanther:PTHR33109
hmmpanther:PTHR33109:SF3HOGENOM:HOG000239501InParanoid:Q9LFT5KEGG:ath:AT5G10310
OMA:SHERFQPPaxDb:Q9LFT5Pfam:Q9LFT5PhylomeDB:Q9LFT5
PIR:T50819PRO:PR:Q9LFT5Proteomes:UP000006548RefSeq:NP_196593.1
STRING:3702.AT5G10310.1TAIR:AT5G10310TMHMM:TMhelixUniGene:At.32394
UniProt:Q9LFT5
Coordinates (TAIR10) chr5:-:3241666..3242127
Molecular Weight (calculated) 13652.80 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.00
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MFAIYKSTLL LLPLILILLI TPQVSSFLQP IQPPISPQVA LIEDKARLGS TPPSCHNRCN NCHPCMAIQV PTLPTRSRFT RVNPFSGGFV RPPSSLTTVL
101: DQYSNYKPMG WKCHCNGHFY NP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)