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AT3G61250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 17
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 17 (MYB17); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 16 (TAIR:AT5G15310.1); Has 8810 Blast hits to 8210 proteins in 476 species: Archae - 0; Bacteria - 0; Metazoa - 695; Fungi - 480; Plants - 5869; Viruses - 3; Other Eukaryotes - 1763 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AL137898EMBL:AY519601
EMBL:BT033129EMBL:CP002686EnsemblPlants:AT3G61250EnsemblPlants:AT3G61250.1
entrez:825297Gene3D:1.10.10.60GeneID:825297GO:GO:0003677
GO:GO:0003700GO:GO:0006355GO:GO:0009751GO:GO:0009753
GO:GO:0009909Gramene:AT3G61250.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF622
HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT3G61250KO:K09422OMA:FRNIASCPfam:PF00249
Pfscan:PS51294PhylomeDB:Q9M2D9PIR:T47917PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_191684.1SMART:SM00717SMR:Q9M2D9
STRING:3702.AT3G61250.1SUPFAM:SSF46689TAIR:AT3G61250tair10-symbols:AtMYB17
tair10-symbols:MYB17UniGene:At.974UniProt:Q9M2D9
Coordinates (TAIR10) chr3:+:22671306..22672551
Molecular Weight (calculated) 33291.40 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.47
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRTPCCDKI GLKKGPWTPE EDEVLVAHIK KNGHGSWRTL PKLAGLLRCG KSCRLRWTNY LRPDIKRGPF TADEEKLVIQ LHAILGNRWA AIAAQLPGRT
101: DNEIKNLWNT HLKKRLLSMG LDPRTHEPLP SYGLAKQAPS SPTTRHMAQW ESARVEAEAR LSRESMLFSP SFYSGVVKTE CDHFLRIWNS EIGEAFRNLA
201: PLDESTITSQ SPCSRATSTS SALLKSSTNS WGGKEVTVAI HGSDYSPYSN DLEDDSTDSA LQLLLDFPIS DDDMSFLEEN IDSYSQAPPI GLVSMVSKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)