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AT3G08770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipid transfer protein 6
Curator
Summary (TAIR10)
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational
Description (TAIR10)
lipid transfer protein 6 (LTP6); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G01870.1); Has 1107 Blast hits to 1106 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1103; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:5359eggNOG:ENOG410J3BEeggNOG:ENOG410YT63EMBL:AB246334
EMBL:AC012562EMBL:AF159803EMBL:AY059951EMBL:AY081617
EMBL:AY086646EMBL:CP002686EnsemblPlants:AT3G08770EnsemblPlants:AT3G08770.1
entrez:820024ExpressionAtlas:Q9LDB4GeneID:820024Genevisible:Q9LDB4
GO:GO:0006869GO:GO:0008289hmmpanther:PTHR33076hmmpanther:PTHR33076:SF1
HOGENOM:HOG000237659InParanoid:Q9LDB4InterPro:IPR000528InterPro:IPR016140
PaxDb:Q9LDB4Pfam:PF00234Pfam:Q9LDB4PhylomeDB:Q9LDB4
PRIDE:Q9LDB4PRINTS:PR00382PRO:PR:Q9LDB4PROSITE:PS00597
ProteinModelPortal:Q9LDB4Proteomes:UP000006548RefSeq:NP_187489.1scanprosite:PS00597
SMART:SM00499SMR:Q9LDB4STRING:3702.AT3G08770.2SUPFAM:SSF47699
TAIR:AT3G08770tair10-symbols:LTP6UniGene:At.16312UniProt:Q9LDB4
Coordinates (TAIR10) chr3:-:2664349..2664784
Molecular Weight (calculated) 11878.50 Da
IEP (calculated) 7.54
GRAVY (calculated) 0.35
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLLLAVCL VLALHCGEAA VSCNTVIADL YPCLSYVTQG GPVPTLCCNG LTTLKSQAQT SVDRQGVCRC IKSAIGGLTL SPRTIQNALE LPSKCGVDLP
101: YKFSPSTDCD SIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)