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AT3G05600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.818
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 14882 Blast hits to 14851 proteins in 1621 species: Archae - 134; Bacteria - 10471; Metazoa - 578; Fungi - 458; Plants - 569; Viruses - 1; Other Eukaryotes - 2671 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G05600-MONOMEReggNOG:ENOG410INNDeggNOG:ENOG410XRPKEMBL:AC011620
EMBL:AY070083EMBL:AY117357EMBL:CP002686EnsemblPlants:AT3G05600
EnsemblPlants:AT3G05600.1entrez:819726ESTHER:arath-At3g05600Gene3D:3.40.50.1820
GeneID:819726GO:GO:0016787Gramene:AT3G05600.1hmmpanther:PTHR10992
hmmpanther:PTHR10992:SF907HOGENOM:HOG000028073InterPro:IPR000073InterPro:IPR000639
InterPro:IPR029058KEGG:ath:AT3G05600merops:S33.971OMA:TAHINDF
Pfam:PF12697PhylomeDB:Q9M9W5PRINTS:PR00412Proteomes:UP000006548
Reactome:R-ATH-2142670RefSeq:NP_187211.1SMR:Q9M9W5STRING:3702.AT3G05600.1
SUPFAM:SSF53474TAIR:AT3G05600UniGene:At.28401UniProt:Q9M9W5
Coordinates (TAIR10) chr3:-:1623485..1624704
Molecular Weight (calculated) 37201.30 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.25
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGIDHRMVS VNGITMHIAE KGPKEGPVVL LLHGFPDLWY TWRHQISGLS SLGYRAVAPD LRGYGDSDSP ESFSEYTCLN VVGDLVALLD SVAGNQEKVF
101: LVGHDWGAII GWFLCLFRPE KINGFVCLSV PYRSRNPKVK PVQGFKAVFG DDYYICRFQE PGKIEGEIAS ADPRIFLRNL FTGRTLGPPI LPKDNPFGEK
201: PNPNSENIEL PEWFSKKDLD FYVSKFEKAG FTGGLNYYRA MDLNWELTAP WTGAKIQVPV KFMTGDFDMV YTTPGMKEYI HGGGFAADVP TLQEIVVIED
301: AGHFVNQEKP QEVTAHINDF FTKLRDNNKS F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)