AT4G28680.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.993 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : L-tyrosine decarboxylase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
L-tyrosine decarboxylase (TYRDC); CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G20340.1); Has 8292 Blast hits to 6272 proteins in 1930 species: Archae - 160; Bacteria - 2569; Metazoa - 2508; Fungi - 762; Plants - 340; Viruses - 8; Other Eukaryotes - 1945 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr4:+:14155248..14158546 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60807.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 545 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFKPQHMYDR EFGTGNGYSN GNGYTNGNGH TNGNGNYNGN GHVNGNGKAN GAKVVKMKPM DSELLREQGH IMVDFIADYY KNLQDSPQDF PVLSQVQPGY 101: LRDMLPDSAP ERPESLKELL DDVSKKIMPG ITHWQSPSYF AYYASSTSVA GFLGEMLNAG LSVVGFTWLT SPAATELEII VLDWLAKLLQ LPDHFLSTGN 201: GGGVIQGTGC EAVLVVVLAA RDRILKKVGK TLLPQLVVYG SDQTHSSFRK ACLIGGIHEE NIRLLKTDSS TNYGMPPESL EEAISHDLAK GFIPFFICAT 301: VGTTSSAAVD PLVPLGNIAK KYGIWLHVDA AYAGNACICP EYRKFIDGIE NADSFNMNAH KWLFANQTCS PLWVKDRYSL IDALKTNPEY LEFKVSKKDT 401: VVNYKDWQIS LSRRFRSLKL WMVLRLYGSE NLRNFIRDHV NLAKHFEDYV AQDPSFEVVT TRYFSLVCFR LAPVDGDEDQ CNERNRELLA AVNSTGKIFI 501: SHTALSGKFV LRFAVGAPLT EEKHVTEAWQ IIQKHASKFT RNDHY |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)