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AT4G28680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : L-tyrosine decarboxylase
Curator
Summary (TAIR10)
Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.
Computational
Description (TAIR10)
L-tyrosine decarboxylase (TYRDC); CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT2G20340.1); Has 8292 Blast hits to 6272 proteins in 1930 species: Archae - 160; Bacteria - 2569; Metazoa - 2508; Fungi - 762; Plants - 340; Viruses - 8; Other Eukaryotes - 1945 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G28680-MONOMERBioCyc:ARA:GQT-383-MONOMERBioCyc:ARA:GQT-384-MONOMERBioCyc:ARA:GQT-385-MONOMER
EC:4.1.1.25eggNOG:COG0076eggNOG:KOG0628EMBL:AL049917
EMBL:AL161573EMBL:CP002687EnsemblPlants:AT4G28680EnsemblPlants:AT4G28680.1
entrez:828986ExpressionAtlas:Q9M0G4Gene3D:3.40.640.10Gene3D:3.90.1150.10
GeneID:828986Genevisible:Q9M0G4GO:GO:0004837GO:GO:0006520
GO:GO:0030170gramene_pathway:4.1.1.25gramene_pathway:PWY-5474gramene_plant_reactome:1119486
gramene_plant_reactome:6876260hmmpanther:PTHR11999hmmpanther:PTHR11999:SF70HOGENOM:HOG000121941
InParanoid:Q9M0G4InterPro:IPR002129InterPro:IPR010977InterPro:IPR015421
InterPro:IPR015422InterPro:IPR015424PaxDb:Q9M0G4Pfam:PF00282
Pfam:Q9M0G4PhylomeDB:Q9M0G4PIR:T10662PRIDE:Q9M0G4
PRINTS:PR00800PRO:PR:Q9M0G4ProteinModelPortal:Q9M0G4Proteomes:UP000006548
Reactome:R-ATH-209905Reactome:R-ATH-209931Reactome:R-ATH-70921RefSeq:NP_194597.1
SMR:Q9M0G4STRING:3702.AT4G28680.2SUPFAM:SSF53383TAIR:AT4G28680
tair10-symbols:TYRDCtair10-symbols:TYRDC1UniGene:At.24829UniProt:Q9M0G4
Coordinates (TAIR10) chr4:+:14155248..14158546
Molecular Weight (calculated) 60807.40 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.26
Length 545 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKPQHMYDR EFGTGNGYSN GNGYTNGNGH TNGNGNYNGN GHVNGNGKAN GAKVVKMKPM DSELLREQGH IMVDFIADYY KNLQDSPQDF PVLSQVQPGY
101: LRDMLPDSAP ERPESLKELL DDVSKKIMPG ITHWQSPSYF AYYASSTSVA GFLGEMLNAG LSVVGFTWLT SPAATELEII VLDWLAKLLQ LPDHFLSTGN
201: GGGVIQGTGC EAVLVVVLAA RDRILKKVGK TLLPQLVVYG SDQTHSSFRK ACLIGGIHEE NIRLLKTDSS TNYGMPPESL EEAISHDLAK GFIPFFICAT
301: VGTTSSAAVD PLVPLGNIAK KYGIWLHVDA AYAGNACICP EYRKFIDGIE NADSFNMNAH KWLFANQTCS PLWVKDRYSL IDALKTNPEY LEFKVSKKDT
401: VVNYKDWQIS LSRRFRSLKL WMVLRLYGSE NLRNFIRDHV NLAKHFEDYV AQDPSFEVVT TRYFSLVCFR LAPVDGDEDQ CNERNRELLA AVNSTGKIFI
501: SHTALSGKFV LRFAVGAPLT EEKHVTEAWQ IIQKHASKFT RNDHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)