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AT1G34245.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23686240 (2013): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Encodes a secretory peptide EPF2 expressed in proliferating cells of the stomatal lineage, known as meristemoids, and in guard mother cells, the progenitors of stomata. Controls asymmetric cell divisions during stomatal development. EPF2 is related to EPF1, also involved in stomatal development.
Computational
Description (TAIR10)
EPIDERMAL PATTERNING FACTOR 2 (EPF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: stomatal complex development, guard cell differentiation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71866.1); Has 42 Blast hits to 42 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25556eggNOG:ENOG410J4UEeggNOG:ENOG410YU6SEMBL:AB499311
EMBL:AC007454EMBL:AY086790EMBL:CP002684EnsemblPlants:AT1G34245
EnsemblPlants:AT1G34245.1entrez:840324GeneID:840324Genevisible:Q8LC53
GO:GO:0005576GO:GO:0010052GO:GO:0010374GO:GO:0019901
GO:GO:0090626GO:GO:2000122Gramene:AT1G34245.1hmmpanther:PTHR33109
hmmpanther:PTHR33109:SF6HOGENOM:HOG000240846InParanoid:Q8LC53iPTMnet:Q8LC53
KEGG:ath:AT1G34245OMA:VEMEMYPPaxDb:Q8LC53Pfam:Q8LC53
Pfscan:PS51257PhylomeDB:Q8LC53PRO:PR:Q8LC53Proteomes:UP000006548
RefSeq:NP_564442.1STRING:3702.AT1G34245.1TAIR:AT1G34245tair10-symbols:EPF2
UniGene:At.39780UniProt:Q8LC53
Coordinates (TAIR10) chr1:+:12472990..12473631
Molecular Weight (calculated) 13317.20 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.15
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKFVRKYMF CLVLVFAACS LVVNSIRTPP LKNTVNGGEK KNADIEQAQT HHKKEISKNG GVEMEMYPTG SSLPDCSYAC GACSPCKRVM ISFECSVAES
101: CSVIYRCTCR GRYYHVPSRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)