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AT3G49900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G13600.1); Has 1290 Blast hits to 750 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 1280; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVRKeggNOG:ENOG410YGPFEMBL:AL132965EMBL:CP002686
EnsemblPlants:AT3G49900EnsemblPlants:AT3G49900.1entrez:824152ExpressionAtlas:Q9M2W8
GeneID:824152Genevisible:Q9M2W8GO:GO:0016567hmmpanther:PTHR32370
hmmpanther:PTHR32370:SF20HOGENOM:HOG000153242InParanoid:Q9M2W8InterPro:IPR000210
InterPro:IPR011333InterPro:IPR027356ncoils:CoilPaxDb:Q9M2W8
Pfam:PF03000Pfam:Q9M2W8Pfscan:PS50097Pfscan:PS51649
PhylomeDB:Q9M2W8PIR:T46056PRO:PR:Q9M2W8PROSITE:PS50097
PROSITE:PS51649ProteinModelPortal:Q9M2W8Proteomes:UP000006548RefSeq:NP_190559.1
SUPFAM:SSF54695TAIR:AT3G49900UniGene:At.28023UniGene:At.35555
UniPathway:UPA00143UniProt:Q9M2W8
Coordinates (TAIR10) chr3:-:18500635..18502614
Molecular Weight (calculated) 57950.80 Da
IEP (calculated) 7.23
GRAVY (calculated) -0.41
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRWTNLGFV DTIYEDEDYV DHHSSSLSSS SSSLSLSPKQ PINLSSSPSM ELESRVHKWS LANNSKPDVF VNVGGTRFHL HKDPLSKSGY LKRHLTGVNE
101: LTLSPPLNIT AETFSLVAGF CYGAHIELTP SNVVSLRIAV EVLLITEADD GGRVRDSLRN LTESYLRRVV FVNVDYIQIV LRSCLLLLPE SETTAFLIGR
201: CVEALMEIGD GDCVNEFLEE AVKLPAGDFN VVADAVQQRF PRHDLLYRIV DAYVKEHDGE MTEEEKVQIC NSIDCDKLSP PLLLHAVQNP KMPLRFIVRA
301: MLQEQLNTRH SIMVAAVAAS CAAPTGVRHR EIATEARDSS VTLGSLLQRD TAARQNCRLR AAMNSTSSRI ESLEKELDTM KRFLSKESEK QKSDRNIVES
401: RSRSVMDSAR SASFHCVHQP SNVNKTQRGD RGSVSNLSTT YRRRRASPPQ AQPQKSIGKR LIMGIKNAFS TSSKQVPKKN AYAVEEIYDG LEDFVWIKDD
501: NDDNISEELH SHYIKNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)