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AT3G22760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tesmin/TSO1-like CXC domain-containing protein
Curator
Summary (TAIR10)
CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules.
Computational
Description (TAIR10)
SOL1; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: TESMIN/TSO1-like CXC 2 (TAIR:AT4G14770.1); Has 1236 Blast hits to 680 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 473; Fungi - 0; Plants - 332; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110UR5eggNOG:KOG1171EMBL:AB022223EMBL:AF205142
EMBL:AY099653EMBL:AY128837EMBL:CP002686EnsemblPlants:AT3G22760
EnsemblPlants:AT3G22760.1entrez:821847GeneID:821847Genevisible:Q8L548
GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0007275
GO:GO:0044212GO:GO:0046872Gramene:AT3G22760.1hmmpanther:PTHR12446
hmmpanther:PTHR12446:SF21HOGENOM:HOG000084455InParanoid:Q8L548InterPro:IPR005172
InterPro:IPR028307InterPro:IPR033467KEGG:ath:AT3G22760OMA:SHSRIET
PANTHER:PTHR12446PaxDb:Q8L548Pfam:PF03638Pfam:Q8L548
Pfscan:PS51634PhylomeDB:Q8L548PRIDE:Q8L548PRO:PR:Q8L548
PROSITE:PS51634ProteinModelPortal:Q8L548Proteomes:UP000006548RefSeq:NP_566717.1
SMART:SM01114STRING:3702.AT3G22760.1TAIR:AT3G22760tair10-symbols:SOL1
UniGene:At.6307UniProt:Q8L548
Coordinates (TAIR10) chr3:+:8044622..8047381
Molecular Weight (calculated) 66657.70 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.58
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTPEKSETQ IGTPVSKLKV EDSPVFSYIC NLSPIKTIKP IPITCPLSSL NYASPPSVFT SPHAVSHKES RFRSQKDVSA SKEVGEEEAL VGSEPEQSYK
101: NDCNTPRVTN DVKDNGCGKD LQVMMDNVKK KSDTPDWETL IAATTELIYG SPRESEAFSC LLKKTSNSEA RLRGSITATS VAVTNTDVVN NESESVDALS
201: ILHRGVRRRC LDFEVKGNNQ QTLGESSSSC VVPSIGLHLN TIAMSSKDKN VANEYSFSGN IKVGVQSSLT PVLHSQHDIV RENESGKDSG QIIEVVPKSL
301: ASVDLTPISP KKKRRKSEQS GEGDSSCKRC NCKKSKCLKL YCECFAAGFY CIEPCSCINC FNKPIHKDVV LATRKQIESR NPLAFAPKVI RNSDSIIEVG
401: EDASKTPASA RHKRGCNCKK SNCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDGSLFEQ DEENETSGTP GTKKTQQNVE LFKPAAPPST PIPFRQPLAQ
501: LPISSNNRLL PPQSHFHHGA IGSSSSGIYN IRKPDMSLLS HSRIETITED IDDMSENLIH SPITTLSPNS KRVSLSHLDS PESTPWRRNG GGRNLIRSFP
601: TFPSLTPHH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)