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AT5G47500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47500-MONOMERBioGrid:20048EC:3.1.1.11eggNOG:COG4677
eggNOG:ENOG410IGPMEMBL:AB025628EMBL:AY102117EMBL:BT000565
EMBL:CP002688EnsemblPlants:AT5G47500EnsemblPlants:AT5G47500.1entrez:834800
Gene3D:2.160.20.10GeneID:834800Genevisible:Q8LPF3GO:GO:0005576
GO:GO:0005618GO:GO:0030599GO:GO:0042545GO:GO:0045330
GO:GO:0045490Gramene:AT5G47500.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081
hmmpanther:PTHR31321hmmpanther:PTHR31321:SF19HOGENOM:HOG000217409InParanoid:Q8LPF3
InterPro:IPR000070InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G47500OMA:HHRKWVG
PaxDb:Q8LPF3Pfam:PF01095Pfam:Q8LPF3PhylomeDB:Q8LPF3
PRIDE:Q8LPF3PRO:PR:Q8LPF3PROSITE:PS00503ProteinModelPortal:Q8LPF3
Proteomes:UP000006548RefSeq:NP_199561.1scanprosite:PS00503SMR:Q8LPF3
STRING:3702.AT5G47500.1SUPFAM:SSF51126TAIR:AT5G47500TMHMM:TMhelix
UniGene:At.7961UniPathway:UPA00545UniProt:Q8LPF3
Coordinates (TAIR10) chr5:-:19271262..19272845
Molecular Weight (calculated) 40044.10 Da
IEP (calculated) 8.90
GRAVY (calculated) -0.22
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQLTNSLNY LFSVSLLLFV SFHCLCFRFS LVAACSNSTD DQQIQHHHHR KWVGPSGHKV ITVSLNGHAQ FRSVQDAVDS IPKNNNKSIT IKIAPGFYRE
101: KVVVPATKPY ITFKGAGRDV TAIEWHDRAS DLGANGQQLR TYQTASVTVY ANYFTARNIS FTNTAPAPLP GMQGWQAVAF RISGDKAFFS GCGFYGAQDT
201: LCDDAGRHYF KECYIEGSID FIFGNGRSMY KDCELHSIAS RFGSIAAHGR TCPEEKTGFA FVGCRVTGTG PLYVGRAMGQ YSRIVYAYTY FDALVAHGGW
301: DDWDHKSNKS KTAFFGVYNC YGPGAAATRG VSWARALDYE SAHPFIAKSF VNGRHWIAPR DA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)