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AT1G63100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G54220.1); Has 2506 Blast hits to 2453 proteins in 309 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 0; Plants - 2441; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEINeggNOG:ENOG410XNT4EMBL:AC010795EMBL:CP002684
EnsemblPlants:AT1G63100EnsemblPlants:AT1G63100.1entrez:842613GeneID:842613
Genevisible:Q9CAN3GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT1G63100.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF16
HOGENOM:HOG000241666InParanoid:Q9CAN3InterPro:IPR005202InterPro:IPR030027
KEGG:ath:AT1G63100OMA:EASAQFQPANTHER:PTHR31636:SF16PaxDb:Q9CAN3
Pfam:PF03514Pfam:Q9CAN3Pfscan:PS50985PhylomeDB:Q9CAN3
PIR:D96656PRIDE:Q9CAN3PRO:PR:Q9CAN3PROSITE:PS50985
ProteinModelPortal:Q9CAN3Proteomes:UP000006548RefSeq:NP_176498.1STRING:3702.AT1G63100.1
TAIR:AT1G63100UniGene:At.66082UniProt:Q9CAN3
Coordinates (TAIR10) chr1:-:23399391..23401367
Molecular Weight (calculated) 73485.50 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.52
Length 658 amino acids
Sequence (TAIR10)
(BLAST)
001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)