AT5G48310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19574961..19580362 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 131667.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||
| Length | 1156 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAQLQRPRIR SPLSENLPPS TFSQSPLKRN SNLSSPILVT PTLNDDESND NMSIESVSDT GEGNELLFSD YDVEDEEEEE VIGRRYDEEE VFGDKSNSKL 0101: NRGMLKDKNL RIEVPFMNRR VTDCELELRR FALKNSTPAS ERRPHTLSSK GSVYWDLEDI RTPSAPPIME SGQEDSISLE IEKDIQKIED EICGEAGVES 0201: SKQESMRSSS HLYRVEEFGE RYFPNLTRFF VISFCGLVLM CLIMVWCSVK DSKTVEDSKI SEICSDELEE CHSISGQYAW QSLLAYDACI RLCLYEWSKG 0301: STEASEFLRD ECRILRGAFG LHKFLLQPRG VRSSEKNNNV KAEPKPSLKS KNVVRKLRVE VKRLRLIPQR KLRGTDSLRS LMNMQIGMGA EYCRQVSSLV 0401: KTGMTSIKQA TLSAVSEEQF SCYLQMKSTA EGGQIEQGSS VCLQSGTGSY HVFFPESEGD ALMIEVQDKK KSVQGKAMIS ITSLTENPND NVRWWPIYHG 0501: EQECVGKIQL FIGSTTTSDE DCHIKNAPVV ETLAYDLLLE AATRAQKFHP QNLRLDGSWK WLLSEFADYY GVSDSYTKLR YLSHVMNVAT PTKTCLQLVH 0601: ELLVPILMAR SEKSLTRQEK SILMDCEIEI EKLMATVFEN YKSLDENFPS GLADISCPVQ VSATTALSSA VQVFTLLHDI LSPEAQETLK NYLQTAAKKR 0701: CRKHMVDTDE YVSCNSEGFL LDSVTISTAY LKMKNLFLII SNEIEADIKI TNEHVLPSSI DLANLAAVVY STQLCHRLRA FLSAVPPSCP LPHVNELLIA 0801: VSDFERNLDS WGISPVHGGV DSRGLFHNYI MVWIHDMELR LLDRCRAEKV PWSGVITNHS TSPFAEDIYE RIKDSLIEYE VVISRWPQYT LILENTASIV 0901: ERAIVKSLEK QYNDILIPLK DSIPKRLNMH VQKLTRRQSS VLYSLPTQLG TFINTIKRVL DVLHPRVEDI LRQWASCLPV VEDKKLIFGE QMNVITVLLR 1001: TKYRNYMQAA VDKLVSNTQS NKNTRLKRIL EEIKDNEREV EVRERMKTLC LQITDSVSNL HDVFTSQIFV ASCRLFWDRM AQVVLKFLEG RKENEVGYKG 1101: SYYALGIIED TFASEMQRLQ GNSLQEKDME APRSVIEARS ILSRDNNANH SSYFYV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)