AT5G55520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Kinesin-related protein (InterPro:IPR010544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26660.1); Has 32425 Blast hits to 20462 proteins in 1550 species: Archae - 335; Bacteria - 3392; Metazoa - 16996; Fungi - 2645; Plants - 1561; Viruses - 54; Other Eukaryotes - 7442 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22488205..22491187 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91318.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.36 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||
| Length | 805 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTMKSPAKI GESRFLGNIS TSSIRNLLPR SIYAKQKSIQ NADTKKSFRS NDENSPPCDP NIQTNHHLNN DDDLHLKKKS PQKVFPSATQ QILPKESTQF 101: EAKSVLVTRA NSMANEITEE DDSLGHQIRD LKEELIRTKS DGYKPDGSKN GYFVRESLSQ LRNSINKSLV MSCENRQGSE KETMYEEEYD DDVVELSKHI 201: NKFHTNCDSD DLRDSIQSSF ASASGCEADS MSGDEICSVD KHKDHKDCAL ADSGPSAVGN GISISLPHQS RILEEPPLSE SPKIRNFRKS VAASTKFQAS 301: PRNVTESSST GNRKPLSPTD SLAASLQRGL NIIDCHQRSS LSNRSSVSFS FGHLSLKPCD EADDNLSASV KLLQKDRPKE GGSSILLCLS CRQKLDQEAQ 401: GGYKAIEEAC VDEKHLKNMC VEQATKIEQL TYQLDEYKKN ALQESSKVTQ QLMKSDDGED ETEVVKETYE TNQRSEEFGK VRIDLSEKEA LLKEIAELKS 501: KLQPTKSTDN VRSSLLLRSF QMRKSIDFTK NTENNSEALE EERERWTEME SEWISLTDDL RMDIDSHRRH AEDLEIELKK EKMATEELND ALSRAMLGHS 601: RFIEQYTELQ EKYDELDERH SVTMAGIVDV KKAAAKAALK GRHGKRFAKA FSAELTAIRA EKEKEREFLK KENKGLKIQL RDTVEAVQAA GELLVRLREA 701: EQAVQSSEER FGIMEEENDK LKQQMEKLKS KHKTEMSTMK QYLAESKLPG SALEAWFKEN EQEEEEEHVS SSEHRTGVVS YDNYTDDQAW RSEFGAIYQD 801: HDHHY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)