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AT4G33270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
putative cdc20 protein (CDC20.1)
Computational
Description (TAIR10)
CDC20.1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33260.1); Has 49595 Blast hits to 24757 proteins in 709 species: Archae - 60; Bacteria - 7548; Metazoa - 19325; Fungi - 10981; Plants - 5978; Viruses - 0; Other Eukaryotes - 5703 (source: NCBI BLink).
Protein Annotations
BioGrid:14748eggNOG:ENOG410XQ8IeggNOG:KOG0305EMBL:AF029262
EMBL:AK117888EMBL:AL035678EMBL:AL161583EMBL:BT026138
EMBL:CP002687EnsemblPlants:AT4G33270EnsemblPlants:AT4G33270.1entrez:829463
Gene3D:2.130.10.10GeneID:829463Genevisible:Q9SZA4GO:GO:0005634
GO:GO:0007067GO:GO:0016567GO:GO:0019900GO:GO:0033597
GO:GO:0051301GO:GO:0051488GO:GO:0097027hmmpanther:PTHR19918
HOGENOM:HOG000195514InParanoid:Q9SZA4IntAct:Q9SZA4InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR024977
InterPro:IPR033010KEGG:ath:AT4G33270KO:K03363OMA:WDINSEN
PANTHER:PTHR19918PaxDb:Q9SZA4Pfam:PF00400Pfam:PF12894
Pfam:Q9SZA4Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9SZA4
PIR:T05978PRIDE:Q9SZA4PRO:PR:Q9SZA4PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9SZA4Proteomes:UP000006548
Reactome:R-ATH-141405Reactome:R-ATH-141430Reactome:R-ATH-174184Reactome:R-ATH-179409
RefSeq:NP_195053.1scanprosite:PS00678SMART:SM00320SMR:Q9SZA4
STRING:3702.AT4G33270.1SUPFAM:SSF50978TAIR:AT4G33270tair10-symbols:CDC20.1
UniGene:At.368UniPathway:UPA00143UniProt:Q9SZA4
Coordinates (TAIR10) chr4:-:16044545..16046590
Molecular Weight (calculated) 50553.40 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.50
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)