AT4G28230.1::SUBA5

AT4G28230.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
nucleus 1.000
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:24134884 (2013): cytoskeleton microtubules	PMID:21798944 (2011): AT5G43380.1:Y2H: PMID:21798944 (2011): AT1G15570.1:Y2H: PMID:21798944 (2011): AT4G01090.1:None: PMID:21798944 (2011): AT1G80000.1:None: PMID:21798944 (2011): AT4G39050.1:None: PMID:21798944 (2011): AT1G30860.1:None: PMID:20706207 (2010): AT2G27970.1:None: PMID:20706207 (2010): AT2G31920.1:None: PMID:20706207 (2010): AT1G48920.1:None: PMID:20706207 (2010): AT5G27640.1:None: PMID:20706207 (2010): AT2G44350.1:None: PMID:20706207 (2010): AT5G25460.1:None: PMID:20706207 (2010): AT1G04810.1:None: PMID:20706207 (2010): AT5G11710.1:None: PMID:20706207 (2010): AT1G69530.1:None: PMID:20706207 (2010): AT1G46840.1:None: PMID:20706207 (2010): AT5G58290.1:None: PMID:20706207 (2010): AT5G15980.1:None: PMID:20706207 (2010): AT2G02560.1:None: PMID:20706207 (2010): AT3G11270.1:None: PMID:20706207 (2010): AT3G55440.1:None: PMID:20706207 (2010): AT1G78770.1:None: PMID:20706207 (2010): AT3G11830.1:None: PMID:20706207 (2010): AT4G24820.1:None: PMID:20706207 (2010): AT5G07310.1:None: PMID:20706207 (2010): AT1G71380.1:None: PMID:20706207 (2010): AT1G52360.1:None: PMID:20706207 (2010): AT2G39090.1:None: PMID:20706207 (2010): AT3G56150.1:None: PMID:20706207 (2010): AT2G04660.1:None: PMID:20706207 (2010): AT5G02530.1:None: PMID:20706207 (2010): AT2G20000.1:None: PMID:20706207 (2010): AT5G20920.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT3G14190.1 nucleus [10.55]
AT5G15510.1 nucleus [9.8]
AT1G08560.1 plasma membrane [9.46]
AT3G15550.1 nucleus [8.85]
AT2G26760.1 cytosol, nucleus [8.65]
AT4G15830.1 nucleus [8.6]
AT3G51280.1 nucleus [8.36]
AT4G26660.1 nucleus [8.34]
AT5G67270.1 nucleus [8.32]
AT5G51600.1 cytosol [8.26]

AT5G27640.1 cytosol
AT3G11830.1 cytosol
AT3G55440.1 cytosol
AT5G20920.1 cytosol
AT1G46840.1 cytosol
AT1G69530.1 extracellular
AT1G71380.1 extracellular
AT5G25460.1 extracellular
AT2G31920.1 extracellular
AT1G52360.1 golgi
AT5G15980.1 mitochondrion
AT2G44350.1 mitochondrion
AT5G07310.1 nucleus
AT5G02530.1 nucleus
AT4G39050.1 nucleus
AT4G01090.1 nucleus
AT1G30860.1 nucleus
AT2G39090.1 nucleus
AT2G27970.1 nucleus
AT2G20000.1 nucleus
AT2G04660.1 nucleus
AT2G02560.1 nucleus
AT1G80000.1 nucleus
AT1G78770.1 nucleus
AT1G48920.1 nucleus
AT3G11270.1 cytosol, nucleus
AT3G56150.1 cytosol, nucleus
AT4G24820.1 cytosol, nucleus
AT1G04810.1 cytosol, nucleus
AT5G58290.1 cytosol, nucleus
AT5G11710.1 golgi, vacuole

Description (TAIR10)

protein_coding :

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410IGK6	eggNOG:ENOG410YPUT	EMBL:AK228240	EMBL:AL161572
EMBL:BT006466	EMBL:CP002687	EnsemblPlants:AT4G28230	EnsemblPlants:AT4G28230.1
entrez:828938	GeneID:828938	Gramene:AT4G28230.1	hmmpanther:PTHR36386
HOGENOM:HOG000090998	IntAct:Q9M0I4	KEGG:ath:AT4G28230	ncoils:Coil
OMA:RRKSCFF	PhylomeDB:Q9M0I4	PIR:T09039	Proteomes:UP000006548
RefSeq:NP_194552.1	STRING:3702.AT4G28230.1	TAIR:AT4G28230	UniGene:At.4519
UniGene:At.69904	UniGene:At.71073	UniProt:Q9M0I4

Coordinates (TAIR10)

chr4:-:13995990..13997198

Molecular Weight (calculated)

44717.80 Da

IEP (calculated)

10.51

GRAVY (calculated)

-0.90

Length

402 amino acids

Sequence (TAIR10)
(BLAST)

001: MTSIEATETL NAPPKLQIWN NAAFDDGDSQ ITSAIEASSW SHLNESFDSD CSKENQFPIS VSSSLQSSVS ITEAPSAKSK TVKTKSAADR SKKRDIDAEI
101: EEVEKEIGRL STKLESLRLE KAEQTARSIA IRGRIVPAKF MESSQKQVKF DDSCFTGSKS RATRRGVSLG PAEIFNSAKK SETVTPLQSA QNRRKSCFFK
201: LPGIEEGQVT TRGKGRTSLS LSPRSRKAKM TAAQKQAATT VGSKRAVKKE EGVLLTIQPK RLFKEDEKNV SLRKPLKPGR VVASRYSQMG KTQTGEKDVR
301: KRSLPEDEEK ENHKRSEKRR ASDESNKSEG RVKKRWEIPS EVDLYSSGEN GDESPIVKEL PKIRTLRRVG GSPRDSGAAK RVAELQAKDR NFTFCQLLKF
401: EE