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AT5G02530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59950.1); Has 12422 Blast hits to 9446 proteins in 764 species: Archae - 2; Bacteria - 1351; Metazoa - 5150; Fungi - 2013; Plants - 2049; Viruses - 53; Other Eukaryotes - 1804 (source: NCBI BLink).
Protein Annotations
BioGrid:17199eggNOG:ENOG4111JAWeggNOG:KOG0533EMBL:AL162971
EMBL:AY140010EMBL:BT006323EMBL:CP002688EnsemblPlants:AT5G02530
EnsemblPlants:AT5G02530.1EnsemblPlants:AT5G02530.2entrez:831923ExpressionAtlas:Q8L719
Gene3D:3.30.70.330GeneID:831923Genevisible:Q8L719GO:GO:0000166
GO:GO:0003723GO:GO:0005654GO:GO:0051028hmmpanther:PTHR19965
hmmpanther:PTHR19965:SF29HOGENOM:HOG000239962InParanoid:Q8L719IntAct:Q8L719
InterPro:IPR000504InterPro:IPR012677InterPro:IPR025715iPTMnet:Q8L719
KEGG:ath:AT5G02530KO:K12881OMA:DAMWQNDPaxDb:Q8L719
Pfam:PF00076Pfam:PF13865Pfam:Q8L719Pfscan:PS50102
PhylomeDB:Q8L719PIR:T48274PRIDE:Q8L719PRO:PR:Q8L719
PROSITE:PS50102ProteinModelPortal:Q8L719Proteomes:UP000006548RefSeq:NP_001190207.1
RefSeq:NP_195873.2SMART:SM00360SMART:SM01218SMR:Q8L719
STRING:3702.AT5G02530.1SUPFAM:SSF54928TAIR:AT5G02530UniGene:At.27625
UniGene:At.72858UniProt:Q8L719
Coordinates (TAIR10) chr5:-:564332..565776
Molecular Weight (calculated) 30781.80 Da
IEP (calculated) 10.51
GRAVY (calculated) -0.68
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)