AT1G74230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycine-rich RNA-binding protein 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a glycine-rich RNA binding protein. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycine-rich RNA-binding protein 5 (GR-RBP5); FUNCTIONS IN: RNA binding, copper ion binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 144 Blast hits to 144 proteins in 27 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27915346..27916857 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28730.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 289 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH 101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG 201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)