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AT2G33410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G14300.1); Has 110468 Blast hits to 48661 proteins in 2208 species: Archae - 78; Bacteria - 27657; Metazoa - 45421; Fungi - 8288; Plants - 12503; Viruses - 709; Other Eukaryotes - 15812 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YA8ZeggNOG:KOG4205EMBL:AC002332EMBL:AY136298
EMBL:BT000416EMBL:CP002685EnsemblPlants:AT2G33410EnsemblPlants:AT2G33410.1
entrez:817905Gene3D:3.30.70.330GeneID:817905GO:GO:0000166
GO:GO:0003676Gramene:AT2G33410.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF308
HOGENOM:HOG000234441IntAct:O22791InterPro:IPR000504InterPro:IPR012677
KEGG:ath:AT2G33410KO:K14411OMA:NASRNFDPfam:PF00076
Pfscan:PS50102PhylomeDB:O22791PIR:B84745PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_180899.1SMART:SM00360SMR:O22791
STRING:3702.AT2G33410.1SUPFAM:SSF54928TAIR:AT2G33410UniGene:At.22217
UniProt:O22791
Coordinates (TAIR10) chr2:+:14156085..14157435
Molecular Weight (calculated) 41330.90 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.65
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)