AT5G55670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G13190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22544669..22546801 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76437.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEGDGRDQM DQFHQNEAIS AVADDGFMAE EEDDDYEDLY NDVNVGEGFL QSMKKNDEAG SRNEEKEKVN MEEEDRVEPV LGEAEVSISI PGLVGESVEK 101: EAEAESGGGG SGSGTDVVVA SSGYGAQEVK VSDVSQEIPG GIGTGTGGGL RVELGQASNR ANDLEAPRGN NISQGLLPPP PVLGNNENLM RPVMGNVNGG 201: IPPGPGSNMV GNGANIAMPG VVGGGTGGGG GGGAFLFVGD LHWWTTDAEL EAELCKYGAV KEVKFFDEKA SGKSKGYCQV EFYDPVAASA CKDALNGYPF 301: NGRPCVVEYA SPYSVKRMGE AQVNRTQQAQ SVIAQAKRGG PADPPSKPLV ANNNNNNNNN AIGGNFQGGE NRGFGRGNWG RGNAQGMGGR GPGGPMRNRP 401: NGMGGRGLMG NGGFGQGMGT GPPMNMMHQP MMGQGFEQAF GGPMARMGGY GGFPGAPGPQ FPGLLSSFPP VGGVGLPGVA PHVNPAFFGR GMPMNGMGMM 501: PNAGVDGGHN MGMWDPNSGG WGAGEDLGSG RAAESSYGEE AASDHQYGEV NHERGARPNP VKEKERASER EWSGSSDRRN REDKDAGYER DIPREKDVGH 601: GYDMPERRHR DDRDTGRERE REHHHKDRER SREHVRDRER ERERDRHREE RERYGGDHRT RHRDEPEHDE EWNRGRSSRG HNKSRLSRED NHRSKSRDTD 701: YGKRRRLTTE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)