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AT5G55670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G13190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AB009050EMBL:CP002688
EnsemblPlants:AT5G55670EnsemblPlants:AT5G55670.1entrez:835661ExpressionAtlas:Q9FM71
Gene3D:3.30.70.330GeneID:835661GO:GO:0000166GO:GO:0003676
Gramene:AT5G55670.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF425HOGENOM:HOG000242877
InterPro:IPR000504InterPro:IPR012677OMA:YSVKRMGPfam:PF00076
Pfscan:PS50102PhylomeDB:Q9FM71PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_200378.1SMART:SM00360SMR:Q9FM71STRING:3702.AT5G55670.1
SUPFAM:SSF54928TAIR:AT5G55670UniGene:At.6556UniProt:Q9FM71
Coordinates (TAIR10) chr5:-:22544669..22546801
Molecular Weight (calculated) 76437.90 Da
IEP (calculated) 5.16
GRAVY (calculated) -1.05
Length 710 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEGDGRDQM DQFHQNEAIS AVADDGFMAE EEDDDYEDLY NDVNVGEGFL QSMKKNDEAG SRNEEKEKVN MEEEDRVEPV LGEAEVSISI PGLVGESVEK
101: EAEAESGGGG SGSGTDVVVA SSGYGAQEVK VSDVSQEIPG GIGTGTGGGL RVELGQASNR ANDLEAPRGN NISQGLLPPP PVLGNNENLM RPVMGNVNGG
201: IPPGPGSNMV GNGANIAMPG VVGGGTGGGG GGGAFLFVGD LHWWTTDAEL EAELCKYGAV KEVKFFDEKA SGKSKGYCQV EFYDPVAASA CKDALNGYPF
301: NGRPCVVEYA SPYSVKRMGE AQVNRTQQAQ SVIAQAKRGG PADPPSKPLV ANNNNNNNNN AIGGNFQGGE NRGFGRGNWG RGNAQGMGGR GPGGPMRNRP
401: NGMGGRGLMG NGGFGQGMGT GPPMNMMHQP MMGQGFEQAF GGPMARMGGY GGFPGAPGPQ FPGLLSSFPP VGGVGLPGVA PHVNPAFFGR GMPMNGMGMM
501: PNAGVDGGHN MGMWDPNSGG WGAGEDLGSG RAAESSYGEE AASDHQYGEV NHERGARPNP VKEKERASER EWSGSSDRRN REDKDAGYER DIPREKDVGH
601: GYDMPERRHR DDRDTGRERE REHHHKDRER SREHVRDRER ERERDRHREE RERYGGDHRT RHRDEPEHDE EWNRGRSSRG HNKSRLSRED NHRSKSRDTD
701: YGKRRRLTTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)