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AT3G26400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 4B1
Curator
Summary (TAIR10)
member of eIF4B - eukaryotic initiation factor 4B
Computational
Description (TAIR10)
eukaryotic translation initiation factor 4B1 (EIF4B1); CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4B2 (TAIR:AT1G13020.1); Has 19846 Blast hits to 11644 proteins in 926 species: Archae - 13; Bacteria - 5482; Metazoa - 6891; Fungi - 1262; Plants - 3241; Viruses - 222; Other Eukaryotes - 2735 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II2YeggNOG:ENOG4112ABAEMBL:AF021805EMBL:AF136005
EMBL:AF145232EMBL:AP001298EMBL:AY140097EMBL:BT006541
EMBL:CP002686EnsemblPlants:AT3G26400EnsemblPlants:AT3G26400.1entrez:822244
GeneID:822244Genevisible:Q9LIN5GO:GO:0003743GO:GO:0005634
GO:GO:0042803Gramene:AT3G26400.1hmmpanther:PTHR32091hmmpanther:PTHR32091:SF0
HOGENOM:HOG000083880InterPro:IPR010433iPTMnet:Q9LIN5KEGG:ath:AT3G26400
ncoils:CoilOMA:DNWAMAKPaxDb:Q9LIN5Pfam:PF06273
PhylomeDB:Q9LIN5ProteinModelPortal:Q9LIN5Proteomes:UP000006548RefSeq:NP_189271.1
STRING:3702.AT3G26400.1TAIR:AT3G26400tair10-symbols:EIF4B1UniGene:At.20975
UniProt:Q9LIN5
Coordinates (TAIR10) chr3:+:9666616..9669081
Molecular Weight (calculated) 57723.00 Da
IEP (calculated) 8.70
GRAVY (calculated) -1.18
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKAWGGIGI GAWADEAERA DEEQAAEATA ATADTQSFPS LREAAAATAT SGKSRKMKKM SLSEFTTGAY TAPGGRNSVG LTQQEILQLP TGPRQRSEEE
101: MQPGRLGGGF SSYGGRSGGR IGRDRDDSDG SWSGGGGGGG RRPYGGGFDD DRRGNQSRVS DFPQPSRADE VDDWGKEKKP LPSFDQGRQG RYSGDGGGFG
201: GGGSGFGGGG GGGGGGLSRA DDVDNWGAGK RQAPVRSSTF GSSFGDSGQE ERRRLVLEPR KVESGGSETP PVVEKTSKPN PFGAARPRED VLAEKGLDWK
301: KIDSEIEAKK GSSQTSRPTS AHSSRPSSAQ SNRSESSGLN NVVKPRPKVN PFGDAKPREV LLEEQGKDWR KMDLELEHRR VDRPETEEEK MLKEEIEELR
401: KKLEKESVAP EIKESDQEPG SNNNHNDLPE IIRGKEKDLE ILTRELDDKV RFRQKPVERP GSGAGRTGTY SERTHSRAGS IDETRSFEST ERPRSRGAVD
501: AWVRPANEQR RNFQGTKERG FFSNRSSSRE GW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)