AT1G13020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic initiation factor 4B2 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes eIF4B2, eukaryotic initiation factor 4B2. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
eukaryotic initiation factor 4B2 (EIF4B2); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1); Has 40205 Blast hits to 18564 proteins in 1251 species: Archae - 53; Bacteria - 12943; Metazoa - 12538; Fungi - 2660; Plants - 4866; Viruses - 455; Other Eukaryotes - 6690 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4440927..4443520 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59327.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.19 | ||||||||||||||||||||||||||||||||||||
| Length | 549 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKPWGGIGA WADEAERADE EQAAEATATA ADSQSFPSLK EAATAKSSKK KKKMTLSEFT KGAYTAPSSA GLTREQMLQL PTGPRQRSED EMQPGRLGGG 101: FSSYGGGRSS GPPGRMSRDR EDSDGSWGGG GGGRRSYGGF DDDQRGSNSR VSDFPQVSRA DEDDDWGKGK KSLPSFDQGR QGSRYGGGGG SFGGGGGGGA 201: GSYGGGGAGA GSGGGGGFSK ADEVDNWAAG KAKSSTFGSG FRESGPEPDR WARGVLPSGG GVQEERRRLV FEPRKADTEV SETPTAVKTS KPSPFGAARP 301: REQVLAEKGL DWKKLDSDIE AKKGQTSRPS SAQSSRPSSA QSNRSESSAL NNVENVVKPR PKVNPFGDAK PREVLLEEQG KDWRKIDSEL EHRRVDRPET 401: EGERMLKEEI EELRKKLEKE AAIAPESKES QQESDSNHQN LPDLIREKEK NLDLLIRELD DKVRFRPRAV ERPGSSASRG GSYSERPHSR AGSIDESRSV 501: ESMERPRSHG TGDNWPRPVD DRRNFQGSKE RGFFNNRNFD RSSSAREGW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)