AT5G07350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TUDOR-SN protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TUDOR-SN protein 1 (Tudor1); FUNCTIONS IN: RNA binding, nuclease activity, nucleic acid binding; INVOLVED IN: response to cadmium ion, protein secretion, response to stress; LOCATED IN: in 6 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Maternal tudor protein (InterPro:IPR008191); BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 2 (TAIR:AT5G61780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2320344..2324892 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108241.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 991 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATGAENQWL KGRVKAVTSG DCLVITALSH NRAGPPPEKT ITFSSLMAPK MARRGGIDEP FAWESKEFLR KLCIGKEVAF KVDYKVEAIA GREFGSVFLG 101: NENLAKLVVK TGWAKVREPG QQNQDKVSPY IKELLQLEEL AKQEGYGRWS KVPGAAEASI RNLPPSAIGD SAGFDAMGLL AANKGKPMEG IVEQVRDGST 201: IRVYLLPEFQ FVQVFVAGVQ APSMGRRTTN GSVVETVPDE PNGDVSAESR GPLTTAQRLA ASAASSVEVS SDPFATEAKY FTEHRVLSRD VRIVLEGVDK 301: FNNLIGSVHY SDGETVKDLG LELVENGLAK FVEWSANMME EEAKKKLKAA ELQCKKDKVK MWANYVPPAT NSKAIHDQNF TGKVVEVVSG DCLIVADDAV 401: PFGSPAAERR VCLSSIRSPK MGNPRREEKP APYAREAREF LRQRLIGKQV IVQMEYSRKV TQGDGPTTSG AADRFMDFGS VFLPSAAKAD SDEVTAPPAA 501: AIAGSQPVGV NIAELVLVRG FGNVVRHRDF EERSNHYDAL LAAEARALAG KKGIHSAKES PAMHITDLTV SAAKKAKDFL PSLQRIRRIP AVVEYVLSGH 601: RFKLYIPKIT CSIAFSFSGV RCPGRGEPYS EEAISVMRRR IMQRDVEIEV ETVDRTGTFL GSMWESRTNV ATVLLEAGLA KMQTSFGADR IAEAHLLEQA 701: ERSAKNQKLK IWENYVEGEE VSNGNTNTVE TRQKETLKVV VTEVLGGGRF YVQSAGDQKI ASIQNQLASL SIKDAPIIGS FNPKRGDIVL AQFSLDNSWN 801: RAMIVTAPRA AVQSPDEKFE VFYIDYGNQE TVPYSAIRPI DPSVSAAPGL AQLCRLAYIK VPSLEDDFGP EAGEYLHTVT LGSGKEFKAV IEERDTSGGK 901: VKGQGTGTEF VVTLIAVDDE ISVNAAMLQE GIARMEKRQK WGHKGKQAAL DALEKFQEEA RKSRIGIWQY GDIESDDEDT GPARKPAGGR R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)