AT4G38710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycine-rich protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycine-rich protein; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1); Has 13357 Blast hits to 7743 proteins in 694 species: Archae - 46; Bacteria - 1331; Metazoa - 4294; Fungi - 1200; Plants - 649; Viruses - 189; Other Eukaryotes - 5648 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18078141..18080002 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48989.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 452 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAAVSSVWA KPGAWALEAE EHEAELKQQP SPTNQKSSAE DSSDFPSLAA AATTKTKKKK GQTISLAEFA TYGTAKAKPA PQTERLTQAE LVALPTGPRE 101: RSAEELDRSK LGGGFRSYGG GRYGDESSSS RWGSSRVSED GERRGGGFNR DREPSRDSGP SRADEDDNWA AAKKPISGNG FERRERGSGG GFFESQSQSK 201: ADEVDSWVST KPSEPRRFVS SNGGGGDRFE KRGSFESLSR NRDSQYGGGG GSESDTWGRR REESGAANGS PPPSGGSRPR LVLQPRTLPV AVVEVVKPES 301: PVLVIVEKPK GANPFGNARP REEVLAEKGQ DWKEIDEKLE AEKLKDIAAA MEKPNEKSTG KMGFGLGNGR KDEERIERSW RKSTEHSEED AQEEEPAVEG 401: AKKEETEDKP AVEEAKKEET EGEQAVEEAK KEETGGEPAV EEAKKEETED KI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)