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AT3G48800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.780
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sterile alpha motif (SAM) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT5G23680.1); Has 394 Blast hits to 394 proteins in 73 species: Archae - 0; Bacteria - 19; Metazoa - 279; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122EEeggNOG:KOG4374EMBL:AL132963EMBL:CP002686
EnsemblPlants:AT3G48800EnsemblPlants:AT3G48800.1entrez:824041Gene3D:1.10.150.50
GeneID:824041Gramene:AT3G48800.1hmmpanther:PTHR10627HOGENOM:HOG000240558
InterPro:IPR001660InterPro:IPR013761KEGG:ath:AT3G48800OMA:FGVGSWR
Pfam:PF07647Pfscan:PS50105PhylomeDB:Q9M303PIR:T49276
PROSITE:PS50105Proteomes:UP000006548RefSeq:NP_190449.1SMART:SM00454
SMR:Q9M303STRING:3702.AT3G48800.1SUPFAM:SSF47769TAIR:AT3G48800
UniGene:At.65261UniProt:Q9M303
Coordinates (TAIR10) chr3:-:18095825..18096661
Molecular Weight (calculated) 30511.30 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.86
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MAELQPVDGQ QTNGGVVTIP ASTSAEATAI AAAGSKRLRR PSVRLGEIGG DQYQQQHHHH AAAAAYDSQG RKSKWTPTTT SGNRKDTSKS SRTRTLTNLS
101: SGYENIGTLD DEREGNVDSF GVGSWRVKKR VGSSAAAKRV RSNWVSKVGD GDEKISGGEE LEGGFRDFSR EDSESPIKEE SLDRDGGGFY GRRRYESNNS
201: SGNREFESNM DGGGKEGVKI WLQELGLGRY WPMFEIHEVD EEVLPLLTLE DLKDMGINAV GSRRKMFCAI QKLGREFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)