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AT2G24050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.860
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MIF4G domain-containing protein / MA3 domain-containing protein
Curator
Summary (TAIR10)
Encodes a putative eukaryotic translation initiation factor.
Computational
Description (TAIR10)
eukaryotic translation Initiation Factor isoform 4G2 (eIFiso4G2); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT5G57870.2); Has 1738 Blast hits to 1375 proteins in 236 species: Archae - 0; Bacteria - 14; Metazoa - 761; Fungi - 205; Plants - 499; Viruses - 3; Other Eukaryotes - 256 (source: NCBI BLink).
Protein Annotations
BioGrid:2291eggNOG:ENOG410IPI8eggNOG:ENOG4111HUFEMBL:AC005170
EMBL:AY062494EMBL:BT002087EMBL:CP002685EnsemblPlants:AT2G24050
EnsemblPlants:AT2G24050.1entrez:816939Gene3D:1.25.40.180GeneID:816939
Genevisible:O82233GO:GO:0003743GO:GO:0005829GO:GO:0006417
Gramene:AT2G24050.1hmmpanther:PTHR23253hmmpanther:PTHR23253:SF32HOGENOM:HOG000239254
InParanoid:O82233IntAct:O82233InterPro:IPR003890InterPro:IPR003891
InterPro:IPR016021InterPro:IPR016024iPTMnet:O82233KEGG:ath:AT2G24050
KO:K03260OMA:MEDEWFRPaxDb:O82233Pfam:O82233
Pfam:PF02847Pfam:PF02854Pfscan:PS51366PhylomeDB:O82233
PIR:A84632PRIDE:O82233PRO:PR:O82233PROSITE:PS51366
ProteinModelPortal:O82233Proteomes:UP000006548RefSeq:NP_179983.1SMART:SM00543
SMART:SM00544SMR:O82233STRING:3702.AT2G24050.1SUPFAM:SSF48371
TAIR:AT2G24050tair10-symbols:eIFiso4G2UniGene:At.12924UniProt:O82233
Coordinates (TAIR10) chr2:-:10225500..10228456
Molecular Weight (calculated) 82894.60 Da
IEP (calculated) 7.74
GRAVY (calculated) -0.54
Length 747 amino acids
Sequence (TAIR10)
(BLAST)
001: MQQQGEPSVL SLRPGGGGGK SRLFVPRFSS SSSFDLTNGG SEETPFPVKR ENSGERVRFS REEILQHRES VQVSDEILRR CKEIAVELFG EEQSWGNHAA
101: ESKITNHTQH RHTETDNRDW HSRSQIPTSG KEWLRDDPRE AKSTWQGSGP TPVLIKAEVP WSAKRGALSD KDRVVKSVKG ILNKLTPEKY ELLKGQLIDA
201: GITSADILKE VIQLIFENAI LQPTFCEMYA LLCFDINGQL PSFPSEEPGG KEITFKRVLL NNCQEAFEGA GKLKEEIRQM TNPDQEMERM DKEKMAKLRT
301: LGNIRLIGEL LKQKMVPEKI VHHIVQELLG DDTKACPAEG DVEALCQFFI TIGKQLDDSP RSRGINDTYF GRLKELARHP QLELRLRFMV QNVVDLRANK
401: WVPRREEVKA KKINEIHSEA ERNLGMRPGA MASMRNNNNN RAAVSGAADG MGLGNILGRP GTGGMMPGMP GTRVMPMDED GWEMARTRSM PRGNRQTVQQ
501: PRFQPPPAIN KSLSVNSRLL PQGSGGLLNG GGRPSPLLQG NGSSSAPQAS KPIPTVEKPQ PRSQPQPQPQ AAPLANSLNA GELERKTKSL LEEYFSIRLV
601: DEALQCVEEL KSPSYHPELV KETISLGLEK NPPLVEPIAK LLKHLISKNV LTSKDLGAGC LLYGSMLDDI GIDLPKAPNS FGEFLGELVS AKVLDFELVR
701: DVLKKMEDEW FRKTVLNAVI KSVRECPSGQ SVLDSQAVEV EACQSLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)