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AT3G19360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger (CCCH-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger (CCCH-type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein (TAIR:AT1G32360.1); Has 1128 Blast hits to 788 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 86; Plants - 385; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink).
Protein Annotations
BioGrid:6803eggNOG:COG5063eggNOG:KOG1677EMBL:AB025624
EMBL:AY037226EMBL:AY081745EMBL:CP002686EnsemblPlants:AT3G19360
EnsemblPlants:AT3G19360.1entrez:821470Gene3D:4.10.1000.10GeneID:821470
Genevisible:Q9LT81GO:GO:0003677GO:GO:0003700GO:GO:0006355
GO:GO:0046872Gramene:AT3G19360.1hmmpanther:PTHR12547hmmpanther:PTHR12547:SF70
HOGENOM:HOG000090850InParanoid:Q9LT81IntAct:Q9LT81InterPro:IPR000571
KEGG:ath:AT3G19360OMA:RMCAKFRPaxDb:Q9LT81Pfam:PF00642
Pfam:Q9LT81Pfscan:PS50103PhylomeDB:Q9LT81PRIDE:Q9LT81
PRO:PR:Q9LT81PROSITE:PS50103ProteinModelPortal:Q9LT81Proteomes:UP000006548
RefSeq:NP_566631.1SMART:SM00356SMR:Q9LT81STRING:3702.AT3G19360.1
SUPFAM:SSF90229TAIR:AT3G19360UniGene:At.22994UniProt:Q9LT81
Coordinates (TAIR10) chr3:+:6707544..6708864
Molecular Weight (calculated) 43123.70 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.75
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS QPSQQLQPAL KRPRLVDDNL FNPASSFPQP SSSNPWMVPS LNPPPVNKGT
101: ANIFYKTRMC AKFRAGTCRN GELCNFAHGI EDLRQPPSNW QEIVGPPPAG QDRERERERE RERERPSLAP VVNNNWEDDQ KIILRMKLCR KFCFGEECPY
201: GDRCNFIHED LSKFREDSGK LRESSVISVG ATAADQPSDT ASNLIEVNRQ GSIPVPAPMN NGGVVKTVYW KTRLCMKFDI TGQCPFGDKC HFAHGQAELH
301: NSVGRVEGEA MNAVASVNKQ AVVPANEAFA MKPITQVTAD SSGLNEEGRR KKCLLKWSDS KKINRIYGDW IDDLPVGQKS TKPVES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)