AT3G19360.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Zinc finger (CCCH-type) family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Zinc finger (CCCH-type) family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein (TAIR:AT1G32360.1); Has 1128 Blast hits to 788 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 454; Fungi - 86; Plants - 385; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:6707544..6708864 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43123.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 386 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS QPSQQLQPAL KRPRLVDDNL FNPASSFPQP SSSNPWMVPS LNPPPVNKGT 101: ANIFYKTRMC AKFRAGTCRN GELCNFAHGI EDLRQPPSNW QEIVGPPPAG QDRERERERE RERERPSLAP VVNNNWEDDQ KIILRMKLCR KFCFGEECPY 201: GDRCNFIHED LSKFREDSGK LRESSVISVG ATAADQPSDT ASNLIEVNRQ GSIPVPAPMN NGGVVKTVYW KTRLCMKFDI TGQCPFGDKC HFAHGQAELH 301: NSVGRVEGEA MNAVASVNKQ AVVPANEAFA MKPITQVTAD SSGLNEEGRR KKCLLKWSDS KKINRIYGDW IDDLPVGQKS TKPVES |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)