AT5G06000.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : eukaryotic translation initiation factor 3G2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
eukaryotic translation initiation factor 3G2 (EIF3G2); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G1 (TAIR:AT3G11400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:1808169..1809742 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 34690.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 308 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIDTIQKTK KLRWGEIDEE EGDYDFLLPP KQMISPDQNG VKKVIEYKFN EEDKKVKITT TTRVQKRALT KQAVERRSWN KFGDAAHEES SSYLTMRSTE 101: DIILERIRAP GSNAEQSTVS GDSMSQLGKP GAVLMVCRLC QKKGDHWTSR CPQKDLLSLM DEPLTAETST STITGTGRAA YVPPSMREGA DRKAGGSDMR 201: SRHDENSVRV TNLSEDTRGP DLMELFRPFG AVTRCHVAID QKTSMSRGFG FVSFVSREDA QRAINKLNGY GYDNLILRVE WSTPKTQLDP FSFADYNNLC 301: KLLNICHS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)