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AT5G06000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 3G2
Curator
Summary (TAIR10)
One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3).
Computational
Description (TAIR10)
eukaryotic translation initiation factor 3G2 (EIF3G2); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G1 (TAIR:AT3G11400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y3CWeggNOG:KOG0122EMBL:AB017060EMBL:CP002688
EnsemblPlants:AT5G06000EnsemblPlants:AT5G06000.1entrez:830487Gene3D:3.30.70.330
GeneID:830487GO:GO:0000166GO:GO:0001731GO:GO:0003743
GO:GO:0005852GO:GO:0006446GO:GO:0008270GO:GO:0016282
GO:GO:0033290Gramene:AT5G06000.1HAMAP:MF_03006hmmpanther:PTHR10352
HOGENOM:HOG000239560InterPro:IPR000504InterPro:IPR012677InterPro:IPR017334
InterPro:IPR024675KEGG:ath:AT5G06000KO:K03248OMA:ERIRAPG
PANTHER:PTHR10352Pfam:PF00076Pfam:PF12353Pfscan:PS50102
PhylomeDB:Q9FI86PIRSF:PIRSF037949PROSITE:PS50102Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
RefSeq:NP_196219.3SMART:SM00360SMR:Q9FI86STRING:3702.AT5G06000.1
SUPFAM:SSF54928TAIR:AT5G06000tair10-symbols:ATEIF3G2tair10-symbols:EIF3G2
UniGene:At.20561UniProt:Q9FI86
Coordinates (TAIR10) chr5:+:1808169..1809742
Molecular Weight (calculated) 34690.10 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.67
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIDTIQKTK KLRWGEIDEE EGDYDFLLPP KQMISPDQNG VKKVIEYKFN EEDKKVKITT TTRVQKRALT KQAVERRSWN KFGDAAHEES SSYLTMRSTE
101: DIILERIRAP GSNAEQSTVS GDSMSQLGKP GAVLMVCRLC QKKGDHWTSR CPQKDLLSLM DEPLTAETST STITGTGRAA YVPPSMREGA DRKAGGSDMR
201: SRHDENSVRV TNLSEDTRGP DLMELFRPFG AVTRCHVAID QKTSMSRGFG FVSFVSREDA QRAINKLNGY GYDNLILRVE WSTPKTQLDP FSFADYNNLC
301: KLLNICHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)