AT3G55340.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : phragmoplastin interacting protein 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phragmoplastin interacting protein 1 (PHIP1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G35410.1); Has 17490 Blast hits to 13137 proteins in 598 species: Archae - 10; Bacteria - 621; Metazoa - 8175; Fungi - 2466; Plants - 2451; Viruses - 16; Other Eukaryotes - 3751 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:20515672..20517832 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66000.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 597 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLSNKKLKQ RIRQDLAESL SVSVSETNPQ SQSLKLLLDS SSHKPRLSKR EKRRNCETFA REDDEIRENE VGNGGSSEKT DTKIKKKRKR DDAVEVDELE 101: GDEGTKEEQK PQKKKNKKKK KKRKVNKTPK KAEEGNVEEK VKVEEIEVNT DNKEEDGVVP NKLYVGGIPY QSTEDEIRSY FRSCGVIIKV DCKMRPEDGA 201: FSGIAFITFD TEDGAKRALA FDRAAMGDRY LTIQQYVKTT TPSIPRRKTS SGFAPEMVDG YNRVYIGNLA WDTTERDIRK LFSDCVINSV RLGKNKETGE 301: FKGYAHVDFK DSVSVAIALK LDQQVICGRP VKICCALKDR PATDHTPGET NNAGSYNMED TYAAADPVPA LAGRSEVDDG NYFATTVSSS KVKRRVCYEC 401: GEKGHLSTAC PIKLQKADDQ ANSKLGQETV DGRPAMQSYG LPKNSGDSYY MNETYASTNE TYNGGYSASA VGTGKVKRRN CYECGEKGHL STACPIKLQN 501: TSHTNSTLDH QTVEAGPTQV TSYSLQKKTR DTENNGGSFM DESYATVPIS IDVTNGANDA SLTSAVSTGK IKKRNCYECG EKGHLSSACP NKLQKQG |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)