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AT2G40430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has 709 Blast hits to 643 proteins in 201 species: Archae - 0; Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111GSNeggNOG:KOG2823EMBL:AC002336EMBL:AC007020
EMBL:AY054491EMBL:AY093264EMBL:CP002685EnsemblPlants:AT2G40430
EnsemblPlants:AT2G40430.1entrez:818636ExpressionAtlas:O22892GeneID:818636
Genevisible:O22892hmmpanther:PTHR14211HOGENOM:HOG000029493InParanoid:O22892
InterPro:IPR011687iPTMnet:O22892ncoils:CoilPANTHER:PTHR14211
PaxDb:O22892Pfam:O22892Pfam:PF07767PhylomeDB:O22892
PIR:D84829PRIDE:O22892PRO:PR:O22892ProteinModelPortal:O22892
Proteomes:UP000006548RefSeq:NP_565931.1STRING:3702.AT2G40430.2TAIR:AT2G40430
UniGene:At.12201UniProt:O22892
Coordinates (TAIR10) chr2:-:16879466..16882365
Molecular Weight (calculated) 50164.90 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.87
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKRSKTSRK GKKAWRANIS SEDIEDFFEK TTRDALSGGN LSAAPSEDLF HVDKSHDLPV KRKIEKHRER VLRVDSILKK NPFVQLVPSS KPKLKKSKKT
101: IVIEDKAPKQ VQKSVGDDSV MADLWGDDSK GEHESNPRKI FKNPSIISAV EIEHPGCSYN PTTESHQDML AEAVAQEMQK VYKTELGPAP VPLTIEGDTL
201: SEDERYFLDV DNFSEGEDNE NVENEVSEAG IKLKENPFVQ LKPSSNTNLK KIEDKTPRQA QKSVGDDSVM VDLLGDDIKE DLKYFLEVGN VGEGEDNKDV
301: KIEVSEAGNN VSRKTKRVTR VELNKRCRQK ALRKKETKEK AKEKILNEID SLPNILEEIA KEDEDKQNKH LRRVIAKQEV LKIRPPRLGK YKFEAPPVQV
401: LLTEEMTGSL RKLKACCTLA RDRFKSLEKR GILVPSKQIR RF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)