AT1G13160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 29206 Blast hits to 13573 proteins in 931 species: Archae - 207; Bacteria - 10267; Metazoa - 6952; Fungi - 3668; Plants - 1163; Viruses - 549; Other Eukaryotes - 6400 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4484634..4488388 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89311.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.70 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||
| Length | 804 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGSLGLTPA SLKASGRSSE NVSLLTLQGK IKRDPEGYET ELQLIYKQFK TSVDLFHELA ALSFSSTGGI GSDPSVSKDL GDRAMFLAHV TPFYPKQLAA 101: FPAQLTGLLR TSCLAMPSGL RNHIAQALIL LMNRKSLVIE DLLALFLDIQ TLGDKNLRNL AFGHIVQTIR KMSITDPKHK SLQKIVISML EQEDEAKAKR 201: ALATLCALHK KKIWLGDKNE RVAIAICEAC FHSSPRIMIS ALRFLLDYEN IDDDDDSDAE SDDDEESKKI DQVVINRQAV YKANNKGTSS SKKKKQAKLQ 301: RAVKSIKRKQ RSSSENTTST FSPLNHLNDA QKFAEKLFSR LQTIKGSGER VETRLMMIKV IARTIGLHKL HLLSFYPFLQ NYALPHVKDI TQILAAAVQS 401: CHDGVPSDVV EPLFKQIVNQ FVHDKSRPEA IAVGLNVVRE MCLRVHDLMT EELLQDLALY KKSHEKAISA AARSLIALFR EINPSLLVKK DRGRPGATVF 501: IPKHYGESNV FSNVPNVELL QESDNESGSD GDQDDDGVEL PIGDDVEQEL IPGDCGSEDK AEEDSNDGDD MNNTEDDSDI DTSIGGDEDE EVNDSDEADT 601: DSENEEIESE EEDGEASDSS VEDSGNKEKA KGKKRKIVDF DANLLSADTS LRALKRFAEA KNEKPSFDEG DGILSNEDFR KIKTLQAKKE AKIALARKGF 701: KVPNSDQLSK KRVDPAKLEA HIRHKLTKEQ RLELVKAGRE DRGKYKSKAA VKQKKTGGSS NKQKEHRKNM PLAAIRSKAG KSKRIKKMKN SISGSQFRGR 801: KAWK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)