AT4G02400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : U3 ribonucleoprotein (Utp) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:1054243..1057884 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96765.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||||||
| Length | 855 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEKRKSTSK TLAKNKKRKG PHLPNSILKT IANEKRPLNS DEDDDEIDSD DENVDLYEYE EGVPEEESKK NNRYDRVDNY DYELPEDFED ENVESDDDED 101: GGNSENEEGE GDDDRHTRML QGLTGMPSAA FQEESKKRPV LYTEAYPESE FNPTRDVLEG KGLISVEDLL APLEGKPGFN DLNKRINRMQ KDTQSVVHAP 201: LPKPERERLE RKAVKGLVEK DFNKWVHLVK RNREAPTVYF NQPVNVGYST VGAIASEFQP RTEFEKKMAS VLKDNELGEA HKEDGAKLLE LNEVSMEDHI 301: KYRDHIAKMR SLLFRHELKS KRIKKIKSKT YHRLKGKDLK KSAMGALMDP EMAKEEAIKQ ETRRVEERMT LKHKNTGKWA KRMLSRGLTE RYDGTRAAIS 401: EQLQINATLS RKMNSTNDGS SSDESDDEEE LSCGSDQDTP SKLIAKAREK TLKTMEDDDV PNSGLLSLPF MARAMKKKNE EANEEAKRAF GEYKELENFG 501: GEDNPKKSAD VSGRRVFGAT SKVEAPKESK KDSDNFYDNS DSDNDMEGIE NNDLGAVGDT ASPARNTGAI TETEKCCGDV ENPASKTTFD VALFASGSWK 601: KMKGSQNAES KKAPKTRVPI SKGQDKKESR DEESEDSESE AEQMVDGILT SASKETYEIP SQAELIQRAF AGDDVVEEFE KDKQEVLNQE VPEPEKPVLV 701: PGWGQWTNVQ KKRGLPSWMV REHEDANKKR KLDLKTRKDY RLRNVIISEK VDKKADKLHT TTLPFPYTSK EVFEHSMRMP IGPEFNPATI VGALNRPEVV 801: KKAGVIIKPV KFEEVNPNEK ADDENPRSHQ KQRPKKGSKT SKGQGKNKSK LKTKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)