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AT1G60640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 42416 Blast hits to 22533 proteins in 1340 species: Archae - 32; Bacteria - 6461; Metazoa - 16431; Fungi - 3749; Plants - 1747; Viruses - 284; Other Eukaryotes - 13712 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J264eggNOG:ENOG410Y30TEMBL:CP002684EnsemblPlants:AT1G60640
EnsemblPlants:AT1G60640.1EnsemblPlants:AT1G60640.2entrez:842358ExpressionAtlas:F4HPX2
GeneID:842358Gramene:AT1G60640.1Gramene:AT1G60640.2hmmpanther:PTHR36332
KEGG:ath:AT1G60640ncoils:CoilOMA:HGENEEVProteomes:UP000006548
RefSeq:NP_001117520.1RefSeq:NP_176263.2STRING:3702.AT1G60640.1SUPFAM:SSF57667
TAIR:AT1G60640UniGene:At.36616UniProt:F4HPX2
Coordinates (TAIR10) chr1:-:22337534..22339513
Molecular Weight (calculated) 38777.70 Da
IEP (calculated) 4.80
GRAVY (calculated) -1.77
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKRRFYKLE HGDKDSGSDS SCFSSDSDPE TEESEQSEEE DSVAEVSEDG DDSGDDESPA AGEDADVDDG DDNSDADDYG GTLEKMSMNR FLEEPPEEEE
101: ENYILGCMIQ SKSVYKCRYC PTVVCLNENT MQAHVSSKKH ARMEKLVKEG KIRTDDEEVD DLETASQEKE KKGNRRSQRQ GKRSQKQEKD SLTKNGENEE
201: VEDPETPSQE KQIKGNRRAR RELRRSQKQE KDSSTKHGEN EEVDNSGTPS QGKQIKENSR ARRQRKRLEK QGKGSLTKHG ENEEVDNPET PSQEKQIKGN
301: SSSRRQLKRS EKQEKIPSTK EGENEDASQK SRKKRRQTKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)