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AT3G57490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:17934214 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S5 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 8574 Blast hits to 8565 proteins in 2893 species: Archae - 263; Bacteria - 5125; Metazoa - 697; Fungi - 227; Plants - 154; Viruses - 0; Other Eukaryotes - 2108 (source: NCBI BLink).
Protein Annotations
BioGrid:10232eggNOG:COG0098eggNOG:KOG0877EMBL:AK228054
EMBL:AL133248EMBL:AY084252EMBL:BT006200EMBL:CP002686
EnsemblPlants:AT3G57490EnsemblPlants:AT3G57490.1entrez:824916Gene3D:3.30.160.20
Gene3D:3.30.230.10GeneID:824916Genevisible:Q9SCM3GO:GO:0003723
GO:GO:0003735GO:GO:0006412GO:GO:0009506GO:GO:0016020
GO:GO:0022627Gramene:AT3G57490.1hmmpanther:PTHR13718hmmpanther:PTHR13718:SF69
HOGENOM:HOG000072596InParanoid:Q9SCM3IntAct:Q9SCM3InterPro:IPR000851
InterPro:IPR005324InterPro:IPR005711InterPro:IPR013810InterPro:IPR014720
InterPro:IPR014721InterPro:IPR018192InterPro:IPR020568iPTMnet:Q9SCM3
KEGG:ath:AT3G57490KO:K02981OMA:GIKDVWTPANTHER:PTHR13718
PaxDb:Q9SCM3Pfam:PF00333Pfam:PF03719Pfam:Q9SCM3
Pfscan:PS50881PhylomeDB:Q9SCM3PIR:T46185PRIDE:Q9SCM3
PRO:PR:Q9SCM3PROSITE:PS00585PROSITE:PS50881ProteinModelPortal:Q9SCM3
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_191308.1scanprosite:PS00585SMR:Q9SCM3
STRING:3702.AT3G57490.1SUPFAM:SSF54211SUPFAM:SSF54768TAIR:AT3G57490
TIGRfam:TIGR01020TIGRFAMs:TIGR01020UniGene:At.34827UniProt:Q9SCM3
Coordinates (TAIR10) chr3:-:21279824..21280887
Molecular Weight (calculated) 30117.90 Da
IEP (calculated) 10.88
GRAVY (calculated) -0.29
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERGVERGG DRGDFGRGFG GRGGGRGGPR GRGRRAGRAP EEEKWVPVTK LGRLVKEGKI TKIEQIYLHS LPVKEYQIID LLVGPSLKDE VMKIMPVQKQ
101: TRAGQRTRFK AFIVVGDSNG HVGLGVKCSK EVATAIRGAI ILAKLSVVPI RRGYWGNKIG KPHTVPCKVT GKCGSVTVRM VPAPRGSGIV AARVPKKVLQ
201: FAGIDDVFTS SRGSTKTLGN FVKATFDCLQ KTYGFLTPEF WKETRFSKSP YQEHTDFLLI PPGVKISEVV VDKSVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)