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AT4G36020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cold shock domain protein 1
Curator
Summary (TAIR10)
Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature.
Computational
Description (TAIR10)
cold shock domain protein 1 (CSDP1); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Cold shock protein (InterPro:IPR011129), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: cold shock domain protein 3 (TAIR:AT2G17870.1); Has 93964 Blast hits to 39618 proteins in 2725 species: Archae - 55; Bacteria - 19157; Metazoa - 4501; Fungi - 1919; Plants - 2885; Viruses - 60267; Other Eukaryotes - 5180 (source: NCBI BLink).
Protein Annotations
BioGrid:15040eggNOG:COG1278eggNOG:COG5082eggNOG:ENOG410IN3J
eggNOG:KOG3070EMBL:AK226815EMBL:AL022373EMBL:AL161588
EMBL:CP002687EnsemblPlants:AT4G36020EnsemblPlants:AT4G36020.1entrez:829758
Gene3D:2.40.50.140Gene3D:4.10.60.10GeneID:829758Genevisible:O65639
GO:GO:0003690GO:GO:0003697GO:GO:0003723GO:GO:0005634
GO:GO:0005737GO:GO:0006355GO:GO:0008270GO:GO:0009409
GO:GO:0009414GO:GO:0009631GO:GO:0009651GO:GO:0010501
GO:GO:0032508Gramene:AT4G36020.1hmmpanther:PTHR11544HOGENOM:HOG000186262
InParanoid:O65639InterPro:IPR001878InterPro:IPR002059InterPro:IPR011129
InterPro:IPR012340InterPro:IPR019844iPTMnet:O65639KEGG:ath:AT4G36020
KO:K09250OMA:RECPNMRPaxDb:O65639Pfam:O65639
Pfam:PF00098Pfam:PF00313Pfscan:PS50158PhylomeDB:O65639
PIR:T05494PRIDE:O65639PRINTS:PR00050PRO:PR:O65639
PROSITE:PS00352PROSITE:PS50158ProteinModelPortal:O65639Proteomes:UP000006548
Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_195326.1scanprosite:PS00352
SMART:SM00343SMART:SM00357SMR:O65639STRING:3702.AT4G36020.1
SUPFAM:SSF50249SUPFAM:SSF57756TAIR:AT4G36020tair10-symbols:CSDP1
UniGene:At.23073UniProt:O65639
Coordinates (TAIR10) chr4:-:17043443..17044342
Molecular Weight (calculated) 30089.30 Da
IEP (calculated) 7.88
GRAVY (calculated) -0.69
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEDQSAAR STGKVNWFNA SKGYGFITPD DGSVELFVHQ SSIVSEGYRS LTVGDAVEFA ITQGSDGKTK AVNVTAPGGG SLKKENNSRG NGARRGGGGS
101: GCYNCGELGH ISKDCGIGGG GGGGERRSRG GEGCYNCGDT GHFARDCTSA GNGDQRGATK GGNDGCYTCG DVGHVARDCT QKSVGNGDQR GAVKGGNDGC
201: YTCGDVGHFA RDCTQKVAAG NVRSGGGGSG TCYSCGGVGH IARDCATKRQ PSRGCYQCGG SGHLARDCDQ RGSGGGGNDN ACYKCGKEGH FARECSSVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)