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AT5G58470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TBP-associated factor 15B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TBP-associated factor 15B (TAF15b); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 115051 Blast hits to 45140 proteins in 2321 species: Archae - 166; Bacteria - 28654; Metazoa - 42717; Fungi - 9006; Plants - 12716; Viruses - 1451; Other Eukaryotes - 20341 (source: NCBI BLink).
Protein Annotations
BioGrid:21204eggNOG:ENOG4111QXAeggNOG:KOG1995EMBL:AB025632
EMBL:AF367294EMBL:AK316814EMBL:AY075677EMBL:AY463619
EMBL:CP002688EnsemblPlants:AT5G58470EnsemblPlants:AT5G58470.1EnsemblPlants:AT5G58470.2
entrez:835960Gene3D:3.30.70.330Gene3D:4.10.1060.10GeneID:835960
Genevisible:Q94KD0GO:GO:0000166GO:GO:0003723GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0009507
Gramene:AT5G58470.1Gramene:AT5G58470.2hmmpanther:PTHR12999hmmpanther:PTHR12999:SF16
InParanoid:Q94KD0IntAct:Q94KD0InterPro:IPR000504InterPro:IPR001876
InterPro:IPR012677KEGG:ath:AT5G58470KO:K13098OMA:GGDYAAP
PaxDb:Q94KD0Pfam:PF00076Pfam:PF00641Pfam:Q94KD0
Pfscan:PS50102Pfscan:PS50199PhylomeDB:Q94KD0PRIDE:Q94KD0
PRO:PR:Q94KD0PROSITE:PS01358PROSITE:PS50102PROSITE:PS50199
ProteinModelPortal:Q94KD0Proteomes:UP000006548RefSeq:NP_568879.3RefSeq:NP_851215.1
scanprosite:PS01358SMART:SM00360SMART:SM00547SMR:Q94KD0
STRING:3702.AT5G58470.1SUPFAM:SSF54928SUPFAM:SSF90209TAIR:AT5G58470
tair10-symbols:TAF15bUniGene:At.9752UniProt:Q94KD0
Coordinates (TAIR10) chr5:-:23638566..23640854
Molecular Weight (calculated) 42318.30 Da
IEP (calculated) 8.60
GRAVY (calculated) -1.11
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGMYNQDGG GGAPIPSYGG DGYGGGGGYG GGDAGYGGRG ASGGGSYGGR GGYGGGGGRG NRGGGGGGYQ GGDRGGRGSG GGGRDGDWRC PNPSCGNVNF
101: ARRVECNKCG ALAPSGTSSG ANDRGGGGYS RGGGDSDRGG GRGGRNDSGR SYESSRYDGG SRSGGSYGSG SQRENGSYGQ APPPAAAIPS YDGSGSYPPP
201: TGYGMEAVPP PTSYSGGPPS YGGPRGGYGS DAPSTGGRGG RSGGYDGGSA PRRQEASYED AATEKVKQCD ADCDDNCDNA RIYISNLPPD VTTDELKDLF
301: GGIGQVGRIK QKRGYKDQWP YNIKIYTDEK GNYKGDACLA YEDPSAAHSA GGFFNNYEMR GNKISVTMAE KSAPRAPTFD QRGGGRGGGG GGYGGGGGDR
401: RRDNYSSGPD RNHHGGNRSR PY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)