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AT3G07030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alba DNA/RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G76010.1); Has 449 Blast hits to 441 proteins in 135 species: Archae - 3; Bacteria - 20; Metazoa - 178; Fungi - 24; Plants - 137; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111WGZeggNOG:KOG2567EMBL:CP002686EnsemblPlants:AT3G07030
EnsemblPlants:AT3G07030.1entrez:3768790Gene3D:3.30.110.20GeneID:3768790
GO:GO:0003676GO:GO:0005829Gramene:AT3G07030.1hmmpanther:PTHR13516
hmmpanther:PTHR13516:SF3InParanoid:F4JD88InterPro:IPR002775iPTMnet:F4JD88
KEGG:ath:AT3G07030OMA:NARTREGPaxDb:F4JD88Pfam:PF01918
PRIDE:F4JD88ProteinModelPortal:F4JD88Proteomes:UP000006548RefSeq:NP_187359.2
SMR:F4JD88STRING:3702.AT3G07030.1SUPFAM:SSF82704TAIR:AT3G07030
UniGene:At.74527UniProt:F4JD88
Coordinates (TAIR10) chr3:-:2223001..2225254
Molecular Weight (calculated) 42504.00 Da
IEP (calculated) 9.46
GRAVY (calculated) -1.04
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRYQRVAKP KPESPINENE IRITSKGLIR NYISYATSLL QEKSVKDIVL KAMGQAISKT VAISEILKNK IPGLHQDIAI SSISITDVWE PTEEGLFPVE
101: LTRHVSMISI TLSLSELNKD SPGYQAPAQS DQSKPQYQPQ QGRQARLPYN AYGEEGEVVA EGEAGEEVDM ETTKGVMKEK TKGTIKKIIK TMKVGIQTRA
201: EAVDVVDEAM AIVGGRGGYG GGRDGGYGGG RDDGYGERRN DGYGERRNDR YGGGRDDGYG GGRDDGYGGG RNDGYGGRRG GFRGGRGGGR DEGYGGGRGG
301: YGGRSGGQGD GYGGGRGDGY GGGRGDGYGG GRGDGYGGGR VDRYDGGRRD GYGGGRYDGY GGGKSDGYGG GRGGYRGGRG GYGRGRGRMG NGGRSRDGAS
401: NQNEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)