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AT1G60650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT5G04280.1); Has 964 Blast hits to 960 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 6; Plants - 589; Viruses - 3; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
BioGrid:27583eggNOG:COG0724eggNOG:KOG0118EMBL:AC002292
EMBL:AK221863EMBL:AY088195EMBL:BT002328EMBL:CP002684
EnsemblPlants:AT1G60650EnsemblPlants:AT1G60650.1EnsemblPlants:AT1G60650.2entrez:842359
Gene3D:3.30.70.330Gene3D:4.10.60.10GeneID:842359Genevisible:O22703
GO:GO:0000166GO:GO:0003676GO:GO:0003677GO:GO:0003723
GO:GO:0005634GO:GO:0008270GO:GO:0009409GO:GO:0009414
Gramene:AT1G60650.1Gramene:AT1G60650.2hmmpanther:PTHR24012HOGENOM:HOG000276232
InParanoid:O22703IntAct:O22703InterPro:IPR000504InterPro:IPR001878
InterPro:IPR012677KEGG:ath:AT1G60650KO:K12885OMA:HMHGREL
PaxDb:O22703Pfam:O22703Pfam:PF00076Pfam:PF00098
Pfscan:PS50102Pfscan:PS50158PhylomeDB:O22703PIR:G96631
PRIDE:O22703PRO:PR:O22703PROSITE:PS50102PROSITE:PS50158
ProteinModelPortal:O22703Proteomes:UP000006548RefSeq:NP_564759.1RefSeq:NP_849832.1
SMART:SM00343SMART:SM00360SMR:O22703STRING:3702.AT1G60650.1
SUPFAM:SSF54928SUPFAM:SSF57756TAIR:AT1G60650UniGene:At.19208
UniGene:At.26558UniProt:O22703
Coordinates (TAIR10) chr1:+:22340089..22342148
Molecular Weight (calculated) 34399.50 Da
IEP (calculated) 8.54
GRAVY (calculated) -1.53
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)