AT2G44710.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:18432902..18436629 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89822.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.00 | ||||||||||||||||||||||||||||||||||||
| Length | 809 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPPKVVKRGG AARRGGRLTR SALKAQNPHV ESSHDESVNI GELSGSDALE AKEVTPEVDK TVEEENPLDV PKSSDSIDDS EAAANPHVDV PSKKETEVEE 101: SVDDFGKDER LDLDDNEPEY EAEEYGGEEF EERELGQEDH ELVNEEGEEL EEEIEVEEEA GEFADEIGDG AEDLDSEDDD DDHAIEEVKH GETVDVEEEE 201: HHDVLHERRK RKEFEIFVGS LDKGASEEDL KKVFGHVGEV TEVRILKNPQ TKKSKGSAFL RFATVEQAKR AVKELKSPMI NGKKCGVTAS QDNDTLFVGN 301: ICKIWTPEAL REKLKHYGVE NMDDITLVED SNNVNMNRGY AFLEFSSRSD AMDAHKRLVK KDVMFGVEKP AKVSFTDSFL DLEDEIMAQV KTIFIDGLLP 401: SWNEERVRDL LKPYGKLEKV ELARNMPSAR RKDFGFVTFD THEAAVSCAK FINNSELGEG EDKAKVRARL SRPLQKAGKG RQSSRSDQRS RHGAGRSGRS 501: SFARLPPRSL ASSRSARGAG SRAPSSSAKR ASGSRGRRPR PPLPPPARAR PLPPPARARP MPPPARARPL PPPARSYDRR PPVPLYPKAS LKRDYDRRDE 601: LPPPRSRPAV SYSSRLSPER HLSYRDDYPP RGSGYSDLPR SSSRSEIRRP FVDDLYSPRF ERPPSYSEGR PRAYEPLPGS KRPYAALDDL PPRYADVDVR 701: HSRPRLDYDV GPSQYGESYG DRIPRSSLGY GSSRNSMSNH DSRGPYSSRQ GMDYGGGSYS GSDVGGMYSS SYGGDLPRRD GGGSSYSSIY SSRGLGGSSY 801: SGGGPGSYY |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)