AT4G03430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pre-mRNA splicing factor-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2770 (EMB2770); FUNCTIONS IN: binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold, response to abiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Ubiquitin supergroup (InterPro:IPR019955), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 (TAIR:AT4G38590.1); Has 3874 Blast hits to 2098 proteins in 386 species: Archae - 98; Bacteria - 366; Metazoa - 1194; Fungi - 916; Plants - 656; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1517411..1520500 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115582.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1029 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVFLSIPNGK TLSIDVNPNS TTISAFEQLA HQRSDVPQSF LRYSLRMRNP SRVFVDSKDS DSILLSDLGV SRFSTVIIHV LLLGGMQAAP PKPRLDFLNS 0101: KPPSNYVAGL GRGATGFTTR SDIGPARAAP DLPDRSALAT AAAPGVGRGA GKPSEAEAED DEEAEEKRYD ENQTFDEFEG NDVGLFANAE YDEDDKEADA 0201: IWESIDQRMD SRRKDRREAK LKEEIEKYRA SNPKITEQFA DLKRKLHTLS ADEWDSIPEI GDYSLRNKKK KFESFVPIPD TLLEKAKKEK ELVMALDPKS 0301: RAAGGSETPW GQTPVTDLTA VGEGRGTVLS LKLDNLSDSV SGQTVVDPKG YLTDLKSMKR TTDEEIYDRN RARLLYKSLT QSNPKNPNGW IAAARVEEVD 0401: GKIKAARFQI QRGCEECPKN EDVWLEACRL ANPEDAKGVI AKGVKLIPNS VKLWLEAAKL EHDVENKSRV LRKGLEHIPD SVRLWKAVVE LANEEDARIL 0501: LHRAVECCPL HLELWVALAR LETYAESKKV LNKAREKLPK EPAIWITAAK LEEANGKLDE ANDNTAMVGK IIDRGIKTLQ REGVVIDREN WMSEAEACER 0601: VGSVATCQAI IKNTIGIGVE EEDRKRTWVA DADECKKRGS IETARAIYAH ALSVFLTKKS IWLKAAQLEK SHGSRESLDA LLRKAVTYVP QAEVLWLMGA 0701: KEKWLAGDVP AARAILQEAY AAIPNSEEIW LAAFKLEFEN KEPERARMLL AKARERGGTE RVWMKSAIVE RELGNVEEER RLLNEGLKQF PTFFKLWLML 0801: GQLEERFKHL EQARKAYDTG LKHCPHCIPL WLSLADLEEK VNGLNKARAI LTTARKKNPG GAELWLAAIR AELRHDNKRE AEHLMSKALQ DCPKSGILWA 0901: ADIEMAPRPR RKTKSIDAMK KCDRDPHVTI AVAKLFWQDK KVEKARAWFE RAVTVGPDIG DFWALFYKFE LQHGSDEDRK EVVAKCVACE PKHGEKWQAI 1001: SKAVENAHQP IEVILKRVVN ALSKEENSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)