AT1G17070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2); Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2; Bacteria - 6; Metazoa - 735; Fungi - 146; Plants - 190; Viruses - 1; Other Eukaryotes - 184 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5837653..5840202 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96889.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 849 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEYQDMERF SMDNDYEGGR WEGDEFVYQK RKEKRKQTKN DATYGIFAES DSDSDDSGGG GSRRKRRKDR DSGRKADLTK PVNFVSTGTV MPNQEIDKDS 101: REHNDEKDRD KIEDNDMIDE DVEVRGGLGI GSSGLGLGFN ANGFDDEDNL LPGALGKKIA DRAKMRGKAK VEKRGQEGGG AKGGKKNTLG SDIGQFEKST 201: KGIGMKLLEK MGYKGGGLGK NQQGIVAPIE AQLRPKNMGM GYNDFKEAKL PDLKKVEEKK IIGVSVSENE QSHGDRGGKN LWKKKKVRKA VYVTAEELLE 301: KKQEAGFGGG QTIIDMRGPQ VRVVTNLENL DAEEKAKEAD VPMPELQHNL RLIVDLVEHE IQKIDRDLRN ERESALSLQQ EKEMLINEEE KQKRHLENME 401: YIADEISRIE LENTSGNLTL DSLAIRFEDL QTSYPDDYKL CSLSTIACSL ALPLFIRMFQ GWDPLSDAVH GLKAISSWRK LLEVEEDHNI WVVSTPYSQL 501: VSEVVLPAVR IAGINTWEPR DPEPMLRFLE TWETLLPSSV LQTILDTVVL PKLSTAVEYW DPRRELVAIH VWVHPWLPIL GQKLEFLYQI IQMKLSNVLD 601: AWHPSDSSAY TILSPWKTVF DTTSWEQLMR RYIVPKLQLA LQEFQVNPAN QNLERFDWVM KWASAVPIHL MADMMERFFF PKWLDVLYHW LRAKPRFEEI 701: QGWYYGWKEL FPQELTANER IRIQLKRGLD MLMEAVEGVE VSQPRAKANE RTQSVPAQAQ AQAKAQMDST EVLSLKEVLE VFAQEQELLF KPKPNRMHNG 801: LQIYGFGNVS VIIDSVNQKL LAQKDGGWFL VTPDDLLRMH NNTTVSAKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)