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AT1G17070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT2G42330.2); Has 1264 Blast hits to 1232 proteins in 250 species: Archae - 2; Bacteria - 6; Metazoa - 735; Fungi - 146; Plants - 190; Viruses - 1; Other Eukaryotes - 184 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP4YeggNOG:KOG2184EMBL:AC007651EMBL:AK222163
EMBL:AK228772EMBL:AY085341EMBL:CP002684EnsemblPlants:AT1G17070
EnsemblPlants:AT1G17070.1entrez:838277GeneID:838277Genevisible:Q9SHG6
GO:GO:0000390GO:GO:0000398GO:GO:0003677GO:GO:0006355
GO:GO:0031981GO:GO:0042752GO:GO:0071008GO:GO:1990446
Gramene:AT1G17070.1hmmpanther:PTHR23329hmmpanther:PTHR23329:SF1HOGENOM:HOG000230470
InParanoid:Q9SHG6InterPro:IPR000467InterPro:IPR022159InterPro:IPR022783
InterPro:IPR024933KEGG:ath:AT1G17070KO:K13103ncoils:Coil
OMA:ELIPPMHPaxDb:Q9SHG6Pfam:PF01585Pfam:PF07842
Pfam:PF12457Pfam:Q9SHG6Pfscan:PS50174PhylomeDB:Q9SHG6
PIR:E86306PIRSF:PIRSF017706PRIDE:Q9SHG6PRO:PR:Q9SHG6
PROSITE:PS50174ProteinModelPortal:Q9SHG6Proteomes:UP000006548RefSeq:NP_173150.1
SMART:SM00443STRING:3702.AT1G17070.1TAIR:AT1G17070UniGene:At.20092
UniGene:At.69774UniProt:Q9SHG6
Coordinates (TAIR10) chr1:+:5837653..5840202
Molecular Weight (calculated) 96889.60 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.61
Length 849 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEYQDMERF SMDNDYEGGR WEGDEFVYQK RKEKRKQTKN DATYGIFAES DSDSDDSGGG GSRRKRRKDR DSGRKADLTK PVNFVSTGTV MPNQEIDKDS
101: REHNDEKDRD KIEDNDMIDE DVEVRGGLGI GSSGLGLGFN ANGFDDEDNL LPGALGKKIA DRAKMRGKAK VEKRGQEGGG AKGGKKNTLG SDIGQFEKST
201: KGIGMKLLEK MGYKGGGLGK NQQGIVAPIE AQLRPKNMGM GYNDFKEAKL PDLKKVEEKK IIGVSVSENE QSHGDRGGKN LWKKKKVRKA VYVTAEELLE
301: KKQEAGFGGG QTIIDMRGPQ VRVVTNLENL DAEEKAKEAD VPMPELQHNL RLIVDLVEHE IQKIDRDLRN ERESALSLQQ EKEMLINEEE KQKRHLENME
401: YIADEISRIE LENTSGNLTL DSLAIRFEDL QTSYPDDYKL CSLSTIACSL ALPLFIRMFQ GWDPLSDAVH GLKAISSWRK LLEVEEDHNI WVVSTPYSQL
501: VSEVVLPAVR IAGINTWEPR DPEPMLRFLE TWETLLPSSV LQTILDTVVL PKLSTAVEYW DPRRELVAIH VWVHPWLPIL GQKLEFLYQI IQMKLSNVLD
601: AWHPSDSSAY TILSPWKTVF DTTSWEQLMR RYIVPKLQLA LQEFQVNPAN QNLERFDWVM KWASAVPIHL MADMMERFFF PKWLDVLYHW LRAKPRFEEI
701: QGWYYGWKEL FPQELTANER IRIQLKRGLD MLMEAVEGVE VSQPRAKANE RTQSVPAQAQ AQAKAQMDST EVLSLKEVLE VFAQEQELLF KPKPNRMHNG
801: LQIYGFGNVS VIIDSVNQKL LAQKDGGWFL VTPDDLLRMH NNTTVSAKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)