AT2G41960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58050.1); Has 11991 Blast hits to 7260 proteins in 458 species: Archae - 17; Bacteria - 481; Metazoa - 5028; Fungi - 1325; Plants - 615; Viruses - 38; Other Eukaryotes - 4487 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17514244..17519015 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 137914.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||
| Length | 1215 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNKYKCKTMP GLTTHMNEHY SSSGFWSEDD DGLTYDQLDQ FWSELSSKAR HELLRIDKQT LFEQARKNMC CSRCLGLLLE GFAQILSAGR AAYEKRMMGP 0101: SKDNCKSNGT RKCTVAYQSP PVHRWGGLTT TRSGCITLLD CFLTAKTFKG LQNVFESNRA RERERELLYP DACGGGGRVW LSQGIAGFGK GHGTRETCNL 0201: HTTRLSCDTL VDFWSALEEH SRQSLLRMKE EDFVERLTYR FDCKKFCRDC RRNVIREFKE LKELKRIQRD PRCTDWFCVA DTAFQYEVDI DSVRADWSQY 0301: FTENAGYHHF EWAIGTGEGE SDILEFKYVG NDRSARVNGL DLRGLHECYI TLRAFKKNGR PSEISVKAHA LRGQQCVHSR LVVGDGFVSI KRGECIRMFF 0401: EHAEEAEEEE DEVLIDKDGN ELDGECLRPQ KHAKSPELAR EFLLDAATVI FKEQVEKAFR DGTARQNAHS IFVCLSSELL EQRVHIACKE IVTLEKQNKL 0501: LEEEEKEKRE EEERKERKRI KEREKKLRRK ERLKEKEREK EQKNPKFSDK AILPIMSREE EGSRNLDEDT NNTIRCEESG IENGDVDLSS PGSPDDQDEE 0601: CLDGCISPRV ETHSCDSTDK EIIDHEDENG CFTPRPAHKT ARLWKEVQTD HSLRLSEKRR FTEKTSFVSS SEAGYCNDRL EMSSGHFNGS DKNVRVKASK 0701: AGGSPNSSRS HEEFQCSDGR TGERYDYHSC SCKPINGYRE KVESNTSATR GMREPKSVFK SDSDLDVSKL NRANRYTQSG YRREIRSKMN NSRNACKMDP 0801: VNVRKVLDSV EPKHSRNSST SDVLSLTTYK AEEIKDVSPT VKPAGTPSLC KATDKLGNGS FNNSTEVDKK MEVHITLKND YLYSKDPMMS RSSSSNNGNI 0901: ESSSMSDSEV ASQQSEGREN LVDTQNDMPD CHEKMVEKVT EMSMDERDVL KIKNISNLPA DNGESKLSGT PFMVPSQNME NMVPGLNTGS YLSQPQNMIL 1001: PQMLNQSIPL PVFQAPSTMG YYHQAPVSWS SASTNGLMQF PHPNHYVYTG PLGYSLNGES PLCMQYGTPL NHSAAPFFNS GPVPIFHPFA ETNTMNTVDQ 1101: AQPLEPLEHS FLKEANERRF NEMPLMETPR KRCPQTDSDE NFSLFHFGGP VALSTGSKAN PARSKDGILE DFSLQFSGDH VFGDPTGNSK KEKENTVGEE 1201: YNLFATSNSL RFSIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)