AT3G48050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BAH domain ;TFIIS helical bundle-like domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17734270..17739412 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 171950.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1613 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHGRVCERRH KSRRRHMLIS SSRVIATVEG GGSSCLSLSS STSFSKDGRK ISVGDCALFK PPQDCPPFIG IIRLIIAEEE DKLKLGVNWL YRPTELKLGK 0101: GILLEAEPNE LFYSFHEDNI PAASLLHPCK VAFLPRGVEL PSGISSFVCR RVYDVTNERL WWLTDQDYID DRQLEVDKLL CKTRSEMHTT LQQGGRSPKS 0201: MNSPTTSQPK DGIQNSNSFL SQGKGRKRER MDHGSESVKR ERSSRVDDSG SGPLRTESGL KSEILKFTEK GGLVDSEGVE KLVQLMLPER NEKKIDLVGR 0301: AILAGVVAAT DKFDCLSRFV QLRGLPVFDE WLQEVHKGKV GDGGSPKDSD RLVDDFLLVL LRALDKLPVN LNALQTCNIG KSVNHLRSHK NSEIGKKARS 0401: LVDTWKKRVE AEMDAKSGSN QGVSWPGRLS HGGRHSGGSA EANKTSSSHL HASKSVSVKQ QVENNLKCVA TSPGSTRSAP SPGSGGNVSK DGQQRNAGAG 0501: GVSEVLAAVK DEKSSSSSQS HNNSQSCSSE HAKTGNLCGK EDARSSTAGS TLKKCSGGSS RHRKSNNVFQ GSSSSASPRG AGLSRSFSSH RNVPSEKISQ 0601: SSLTSEKTLE VPLTEGSGNK LIVKLPNRGR SPAQSVSGGS LEDPAPVNSR VSSPVHAVKQ ELCDNNGREK NHSYRPNVSS VLNAESWQSN ELKDILTGSQ 0701: EAAGSPLVAG DERGGDLKDS DKASGNVKGT SSLGNEFKSG ERHGGTLSSM NALIESCVRY SETNASLAGS DDVGMNLLAS VAADEMSKSP VASPSVSQPP 0801: NSVMNENSTV GNNTKLMASD GLPHEQHQAV CTSVSTEQGE QHVSSSGTQL ESEIKNESKT GDRDKSSNSD TEDLQRLVDQ CLESNDNSDG VVASPALPTK 0901: AVKEKILNDS DSGELKDIKT DVKSEADCTS DSTKRVASSM LTECRDVSKK VDSVAVEQTP LEGVDDDKKE EKPPTALSSE LVKKVEEDVP VSSGISRDMD 1001: AVSIGRPITE MVNNVAFNHM DQKDVKKIKQ DCDTSVGAIK DTSAGLDSSV TKGKVEPVEG NLENSEVKER YSGLRATPGL SPKEAEDLER PNGPKTSDAD 1101: GDEAGECTSA ARDASSVSAA ASAGSEMDAR VEFDLNEGFD GDDAKHGDSN NFSGSVFLTP TPLQPVKTLP FPVAPVSSGT RASITVAAAA KGPFVPPEDL 1201: LRNKGAVGWR GSAATSAFRP AEPRKPQDVL LSINNTSTSD ASTSAGKQTR TFLDFDLNVP DERVLEDLAS QRSGNPTNCT SDITNSFDQV RSGVMGSALD 1301: HSSGGLDLDL NKVDDSTDMI SYTMNSSHRL DSSFQQVKLP STGGRRDFDL NDGPVGDDAA VEPSMVLNQH SRSGLPSQPS LSGIRVNGEN MASFSTWFPA 1401: ANAYSAVSMP PIMPERGDQP FPMIATRGPQ RMLGPTTGVS SFTPEGYRGP VLSSSPAMPF QSTTFQYPVF PFGNSFPVTS ANFPGASTAH MDSSSSGRAC 1501: FPGVNSQILG PGVPVPSNYP RPYIVGLPNG GSNGGVLDNG AKWFRSGLDL NSGPGGHETE GRDESTLVAR QLSSSASLPL KEDQARMYQM SGGVLKRKEP 1601: EGGWDGYRQS SWQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)