AT5G12400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA binding;zinc ion binding;DNA binding | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA binding;zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), DDT domain (InterPro:IPR004022), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G22760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4013813..4021018 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 179992.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1602 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELVGKVVRK EIQGIGFCSG TVRSRDSSGF FEIVYENGVT EISELDEVVA LVMGDGKSQE NSVPVKKKRV GRKPKKRSRV ARVVEIKRES SGLNEVNVDL 0101: NDGVAENSGV SEENLRGNVD LNCGPVETLG RTWDSSVTDL NRTVSESETG FDLTTGLDWN SNENLGLVNV NIDYEENCSD KRKWDIDLNM DASCDLDNAA 0201: ICDFSGQKRE VGFDLNVEVD VENSKDEEYS QMNGNDIVQE INMQDGNGAQ DNIETGEYKE VHVAEVSSAE LLEEIQKQNI VSPQDLKNLN SNGVEKDPDL 0301: PHHDAKTVDE TLSDRGNSGE YTSGRRKRRK ASDNPKFMSE PQLRRSARRR LARSPVSSTV TACFVEEVSP SPSISSLTEE KTWIVDGKAD NISALPPKPQ 0401: LPPSSPILDL DGLPVLDVFT AYSCLRSFST LLFLSPFELK DFVEALRCMS PSLLFDSIHV SVLQILRKHL KQLAAEGDLS ASACLRSLDW DTLDVVTYPL 0501: FVVEYLLCSG SKDNPGLDLT RLNFFRNDYF RQPVNLKIEI LSRLCDDMTD AEVVRAELNK RSFAAEFEME LDRKTNTEVR RRKRTMMELA DDFSLNNEVI 0601: DTSFDRNSDD CCFCKMDGSL LCCDGCPAAY HSKCVGLASH LLPEGDWYCP ECAFDRRAPG LKPDKQIRGA EFIEIDPHGR KYYSSCGYLL VIDTDGTGSL 0701: NYYHVTDVNL VLEQLKSCSS FYAGVVSAIR KHLDIPVRPV RTISGLNSQM SVCMDKSVKG MIPSIDGFGA PLPASEKQST SGAKKKLNKA TSNGWSHNHG 0801: PRTRRKISDS ATALDILNMS SEGSAETVQN GSDVQRLHEP ASSSMLDIMK EPNMNSQNLA KINTRKGTKP NVQTETGYRN QYIFAQMTRS VYEEMIRKSP 0901: IRTNDMRSDE EIASTQVRTI LMKTTKFQWR NIQSLYLDAW KENCGWCHSC KNSSEDAGTE INCLFNMSLG ALRGLSESEV ANIQSFEKNS HLLAIICQIL 1001: SLESRLQGLL VGPWLNPQHS SFWREHILKA SNISSLKHLL VDLEANLHHR VLSLEWLSHV DAAVVMGSAI HILIASTRSW SKTAIGKRRG TLLDSGVNPT 1101: AKKNGGLTMC WWRGGQLSRR LFNWKVLPRA LISKAARQGG SMNIPGIFYP ENSESAKRSR RVAWEAAVES STTSEQLGLQ IRTLQSYIKW DDIENSHLLP 1201: TLDKESRKSA RLFKKAIVRR KCTEEETVKY LLDFGKRRNI PDVVSKNGCM VEESSSGRKR FWLNESHVPL HLVKGFEEKK AVRKTSKPGG SFRHSEIGKL 1301: RKRSSEGKGF SYLFERAERS ESSLCEQCKK VVPLSEAASC HICKGVFHKK HIRRGEKEGM YICVPCKSEV LSKEQPTVRK RGRPPGSFRK KIGVQTQKRK 1401: KVIAARKSPR LKKTKTSMAE RIAIRLKNHK KVVASKPLRR SGRQLKHVIR LQDESKVPEG SKKRKLETKR GRGRPKKVKQ EISIRKARTD RCLNYWLNGL 1501: LLSRKAGNER VHQFHRERYY VPLENSDSDH DQPKCHLCGS IESKSGSTFI SCELCGEWYH GDAYGLNEKN SSMVIGFRCH LCRKQSSPTC PHMRSTTSPV 1601: AS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)